Citation Impact
Citing Papers
Neurotoxic protein expression reveals connections between the circadian clock and mating behavior in Drosophila
2006 StandoutNobel
A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
2003 StandoutScience
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Ubiquitinated TDP-43 in Frontotemporal Lobar Degeneration and Amyotrophic Lateral Sclerosis
2006 StandoutScience
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
2015 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
2008 Standout
CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing
2017 StandoutNobel
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
2011 Standout
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
Aphids acquired symbiotic genes via lateral gene transfer
2009
The human olfactory receptor gene family
2004 StandoutNobel
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
2011 Standout
Finishing the euchromatic sequence of the human genome
2004 StandoutNature
Comparative analysis ofCorazonin‐encoding genes (Crz's) inDrosophilaspecies and functional insights intoCrz‐expressing neurons
2005 StandoutNobel
Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences
2002 StandoutNobel
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment
2010
EGASP: the human ENCODE Genome Annotation Assessment Project.
2006
The PKA‐CREB system encoded by the honeybee genome
2006
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
2006
Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thalianasequences
1999
Global analysis of protein expression in yeast
2003 StandoutNature
Reevaluating Human Gene Annotation: A Second-Generation Analysis of Chromosome 22
2002
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
2012 Standout
Genome annotation past, present, and future: How to define an ORF at each locus
2005
A forward-genetic approach for analysis of the immune system
2003 StandoutNobel
Structural diversity and functional implications of the eukaryotic TDP gene family
2003
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
Mining the human genome using microarrays of open reading frames
2000
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
2006
Prediction of complete gene structures in human genomic DNA
1997 Standout
Comparative ab initio prediction of genestructures using pair HMMs
2002
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
Defining a 5??? splice site by functional selection in the presence and absence of U1 snRNA 5??? end
2002
Pfam: the protein families database
2013 Standout
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
2005 Standout
High-Resolution Profiling of Histone Methylations in the Human Genome
2007 Standout
Frequent activating FGFR2 mutations in endometrial carcinomas parallel germline mutations associated with craniosynostosis and skeletal dysplasia syndromes
2007
Evidence of en bloc duplication in vertebrate genomes
2002
A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna
1999 StandoutNobel
Screening for gene mutations in a 500 kb neuroblastoma tumor suppressor candidate region in chromosome 1p; mutation and stage-specific expression in UBE4B/UFD2
2003
A Tool for Analyzing and Annotating Genomic Sequences
1997
Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA
2006
The U1 snRNP protein U1C recognizes the 5′ splice site in the absence of base pairing
2002 StandoutNatureNobel
Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse
2001 StandoutNobel
A large-scale analysis of mRNA polyadenylation of human and mouse genes
2005
Prediction of Plant MicroRNA Targets
2002 Standout
OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
2013
Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve
2000
Integrated genomic characterization of endometrial carcinoma
2013 StandoutNature
Computational methods for the identification of genes in vertebrate genomic sequences
1997
The Genomic Structure of Human Olfactory Receptor Genes
2000
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
2010
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes
2006 Standout
Assessing the accuracy of prediction algorithms for classification: an overview
2000 StandoutNobel
HISAT: a fast spliced aligner with low memory requirements
2015 Standout
Long Human–Mouse Sequence Alignments Reveal Novel Regulatory Elements: A Reason to Sequence the Mouse Genome
1997
Computational prediction of eukaryotic protein-coding genes
2002
Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA
1998
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
2002
GeneWise and Genomewise
2004 Standout
Comparative Gene Prediction in Human and Mouse
2003
Gene finding with a hidden Markov model of genome structure and evolution
2003
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Dictionary-driven prokaryotic gene finding
2002
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
Cross-Referencing Eukaryotic Genomes: TIGR Orthologous Gene Alignments (TOGA)
2002
Integrating genomic homology into gene structure prediction
2001
A beginner's guide to eukaryotic genome annotation
2012
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
2010 Standout
Proteomics to study genes and genomes
2000 StandoutNature
The Ensembl Automatic Gene Annotation System
2004
Phytozome: a comparative platform for green plant genomics
2011 Standout
Finding signals that regulate alternative splicing in the post-genomic era.
2002
SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model
2003
Computational Inference of Homologous Gene Structures in the Human Genome
2001
The kinesin KIF1Bβ acts downstream from EglN3 to induce apoptosis and is a potential 1p36 tumor suppressor
2008 StandoutNobel
The Protein Kinase Complement of the Human Genome
2002 StandoutScience
COMPARATIVE GENOMICS
2004
An allelic series of mutations in Smad2 and Smad4 identified in a genotype-based screen of N -ethyl- N - nitrosourea-mutagenized mouse embryonic stem cells
2002
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
2007 Standout
Functional mapping of disease susceptibility loci using cell biology
2006 StandoutNobel
The Gene-Finder computer tools for analysis of human and model organisms genome sequences.
1997
A generalized hidden Markov model for the recognition of human genes in DNA.
1996
Sequence analysis of mouse vomeronasal receptor gene clusters reveals common promoter motifs and a history of recent expansion
2001 StandoutNobel
Large-scale analysis of the human and mouse transcriptomes
2002 StandoutNobel
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 Standout
TopHat: discovering splice junctions with RNA-Seq
2009 Standout
Effects of the U1C L13 mutation and temperature regulation of yeast commitment complex formation
2004 StandoutNobel
Conservation of sequence and structure flanking the mouse and human β-globin loci: The β-globin genes are embedded within an array of odorant receptor genes
1999 StandoutNobel
Works of Moisès Burset being referenced
SpliceDB: database of canonical and non-canonical mammalian splice sites
2001
Analysis of canonical and non-canonical splice sites in mammalian genomes
2000
Evaluation of Gene Structure Prediction Programs
1996
An Assessment of Gene Prediction Accuracy in Large DNA Sequences
2000