Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics
2020
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Efficient and precise single-cell reference atlas mapping with Symphony
2021
Single-cell transcriptome landscape of circulating CD4+ T cell populations in autoimmune diseases
2024 StandoutNobel
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Nanopore sequencing at Mars, Europa, and microgravity conditions
2020 StandoutNobel
Deciphering cell–cell interactions and communication from gene expression
2020
The history and advances in cancer immunotherapy: understanding the characteristics of tumor-infiltrating immune cells and their therapeutic implications
2020 Standout
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
The Biogenesis, Functions, and Challenges of Circular RNAs
2018 Standout
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
2016
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Fast, sensitive and accurate integration of single-cell data with Harmony
2019 Standout
MicroRNA sponges: Progress and possibilities
2010
Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations
2016
AI in health and medicine
2022 Standout
Update on hypoxia-inducible factors and hydroxylases in oxygen regulatory pathways: from physiology to therapeutics
2017 StandoutNobel
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
2018
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
2019
Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics
2018
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Classification and characterization of human endogenous retroviruses; mosaic forms are common
2016
Inferring spatial and signaling relationships between cells from single cell transcriptomic data
2020
Metazoan MicroRNAs
2018 Standout
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
2019 Standout
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
2020 Standout
Functional interrogation of a SARS-CoV-2 host protein interactome identifies unique and shared coronavirus host factors
2020 StandoutNobel
Single-cell Transcriptome Profiling reveals Dermal and Epithelial cell fate decisions during Embryonic Hair Follicle Development
2020
Three decades of nanopore sequencing
2016
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting
2012
The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth
2023 Standout
CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
2020 Standout
Dictionary learning for integrative, multimodal and scalable single-cell analysis
2023 Standout
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
2017
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
2020 Standout
Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis
2020
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Sensitive protein alignments at tree-of-life scale using DIAMOND
2021 Standout
New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data
2020
Mapping single-cell data to reference atlases by transfer learning
2021
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
The biogenesis, biology and characterization of circular RNAs
2019 Standout
The Output of Protein-Coding Genes Shifts to Circular RNAs When the Pre-mRNA Processing Machinery Is Limiting
2017
PGE2-EP2/EP4 signaling elicits immunosuppression by driving the mregDC-Treg axis in inflammatory tumor microenvironment
2022 StandoutNobel
Endogenous microRNA sponges: evidence and controversy
2016 Standout
Comprehensive Integration of Single-Cell Data
2019 Standout
Inhibition of SARS-CoV-2 Infections in Engineered Human Tissues Using Clinical-Grade Soluble Human ACE2
2020 Standout
Nucleic Acid Extraction and Sequencing from Low-Biomass Synthetic Mars Analog Soils for In Situ Life Detection
2019 StandoutNobel
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing
2020
Synthetic Siglec-9 Agonists Inhibit Neutrophil Activation Associated with COVID-19
2021 StandoutNobel
Diversity, Mechanisms, and Significance of Macrophage Plasticity
2019 Standout
Predicting effective microRNA target sites in mammalian mRNAs
2015 Standout
Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing
2019
The Myeloid Cell Compartment—Cell by Cell
2019
A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA
2022 StandoutNobel
MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach
2017
Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing
2016
Single-cell connectomic analysis of adult mammalian lungs
2019
Macrophage Polarization in Cardiac Tissue Repair Following Myocardial Infarction
2021
Immunology of Acute and Chronic Wound Healing
2021 Standout
Viruses, microRNAs, and Host Interactions
2010
Works of Mohan Bolisetty being referenced
Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes
2018
Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart
2018
Determining exon connectivity in complex mRNAs by nanopore sequencing
2015
Regulation of alternative splicing in Drosophila by 56 RNA binding proteins
2015
Single-cell transcriptomes identify human islet cell signatures and reveal cell-type–specific expression changes in type 2 diabetes
2016
Splicing of internal large exons is defined by novel cis -acting sequence elements
2012
Unexpected Diversity and Expression of Avian Endogenous Retroviruses
2012
Reticuloendotheliosis Virus Strain T Induces miR-155, Which Targets JARID2 and Promotes Cell Survival
2009