Ming‐Chya Wu

Stochastic thermodynamics, fluctuation theorems and molecular machines

Investigation of the molecular surface area and volume: Defined and calculated by the molecular face theory

Geometric measures of large biomolecules: Surface, volume, and pockets

Single-molecule experiments in biological physics: methods and applications

The Origin of Consistent Protein Structure Refinement from Structural Averaging

The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities

Wordom: A user‐friendly program for the analysis of molecular structures, trajectories, and free energy surfaces

Computer Simulation of Liquids

MMPBSA.py: An Efficient Program for End-State Free Energy Calculations

Gaia: automated quality assessment of protein structure models

PLUMED 2: New feathers for an old bird

Implicit Nonpolar Solvent Models

Phase diagram and universality of the Lennard-Jones gas-liquid system

Recognition of 1,3‐Butadiene by a Porous Coordination Polymer

g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations

CASTp 3.0: computed atlas of surface topography of proteins

Unzipping of DNA with correlated base sequence

Finite-size corrections and scaling for the triangular lattice dimer model with periodic boundary conditions

Enveloping triangulation method for detecting internal cavities in proteins and algorithm for computing their surface areas and volumes

CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins

ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations