Citation Impact
Citing Papers
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
2010 Standout
High burden and pervasive positive selection of somatic mutations in normal human skin
2015 StandoutScience
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
BEAST: Bayesian evolutionary analysis by sampling trees
2007 Standout
MRBAYES: Bayesian inference of phylogenetic trees
2001 Standout
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
2011 Standout
Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae
2005 StandoutNatureNobel
Animal mitochondrial genomes
1999 Standout
Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA
2006
Estimating Maximum Likelihood Phylogenies with PhyML
2009
Tandem repeats finder: a program to analyze DNA sequences
1999 Standout
Assessment of Substitution Model Adequacy Using Frequentist and Bayesian Methods
2010
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
2010 Standout
Mitochondrial genome variation and the origin of modern humans
2000 StandoutNatureNobel
c-Myc-regulated microRNAs modulate E2F1 expression
2005 StandoutNature
Parsimony, Likelihood, and the Role of Models in Molecular Phylogenetics
2000
A periodic pattern of mRNA secondary structure created by the genetic code
2006
Molecular phylogenetics: state-of-the-art methods for looking into the past
2001
Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
1999
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
2010 StandoutNature
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
2016 Standout
A view of Neandertal genetic diversity
2000 StandoutNobel
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
2004 Standout
When is it safe to use an oversimplified substitution model in tree- making?
1996
DNA sequence variation in a non-coding region of low recombination on the human X chromosome
1999 StandoutNobel
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
1994 Standout
Frequency of word-use predicts rates of lexical evolution throughout Indo-European history
2007 StandoutNature
Great ape DNA sequences reveal a reduced diversity and an expansion in humans
2001 StandoutNobel
Ancestral polyploidy in seed plants and angiosperms
2011 StandoutNature
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Models of amino acid substitution and applications to mitochondrial protein evolution
1998
Regulating highly dynamic unstructured proteins and their coding mRNAs
2009
The genetical archaeology of the human genome
1996 StandoutNobel
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
2002 Standout
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
2006 Standout
Tunicates and not cephalochordates are the closest living relatives of vertebrates
2006 StandoutNature
Neandertal DNA Sequences and the Origin of Modern Humans
1997 StandoutNobel
ARB: a software environment for sequence data
2004 Standout
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
1994
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Mathematical Elegance with Biochemical Realism: The Covarion Model of Molecular Evolution
2001
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
2000 Standout
Broad phylogenomic sampling improves resolution of the animal tree of life
2008 StandoutNature
PAML 4: Phylogenetic Analysis by Maximum Likelihood
2007 Standout
Sequence Alignment with Tandem Duplication
1997
A microRNA polycistron as a potential human oncogene
2005 StandoutNature
Molecular Evolution of a MicroRNA Cluster
2004
Model of amino acid substitution in proteins encoded by mitochondrial DNA
1996
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
2007 Standout
The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods
2010
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
2003 Standout
Consideration of RNA Secondary Structure Significantly Improves Likelihood-Based Estimates of Phylogeny: Examples from the Bilateria
2005
ModelFinder: fast model selection for accurate phylogenetic estimates
2017 Standout
MODELTEST: testing the model of DNA substitution.
1998 Standout
New methods for estimating the numbers of synonymous and nonsynonymous substitutions
1995
On Near-Optimal Alignments of Biological Sequences
1994
An Evaluation of Phylogenetic Informativeness Profiles and the Molecular Phylogeny of Diplazontinae (Hymenoptera, Ichneumonidae)
2010
Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment
1997
Empirical and Hierarchical Bayesian Estimation of Ancestral States
2001
Molecular Coproscopy: Dung and Diet of the Extinct Ground Sloth Nothrotheriops shastensis
1998 StandoutScienceNobel
The Neandertal type site revisited: Interdisciplinary investigations of skeletal remains from the Neander Valley, Germany
2002 StandoutNobel
PHYLOGENETIC ANALYSIS IN MOLECULAR EVOLUTIONARY GENETICS
1996
Sorting by Reversals: Genome Rearrangements in Plant Organelles and Evolutionary History of X Chromosome
1995
A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data
2004
Extensive Nuclear DNA Sequence Diversity Among Chimpanzees
1999 StandoutScienceNobel
Computational Molecular Evolution
2006 Standout
Evaluating the robustness of phylogenetic methods to among-site variability in substitution processes
2008
Mapping the Origins and Expansion of the Indo-European Language Family
2012 StandoutScience
DNA sequence of the mitochondrial hypervariable region II from the Neandertal type specimen
1999 StandoutNobel
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies
1996 Standout
Prospects for inferring very large phylogenies by using the neighbor-joining method
2004 Standout
Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
1997
Molecular phylogenetics and the origins of placental mammals
2001 StandoutNature
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
2012 Standout
A novel strategy for generating monoclonal antibodies from single, isolated lymphocytes producing antibodies of defined specificities.
1996
A Novel Mutation in CD83 Results in the Development of a Unique Population of CD4+ T Cells
2004 StandoutNobel
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
2001 StandoutScience
ModelOMatic: Fast and Automated Model Selection between RY, Nucleotide, Amino Acid, and Codon Substitution Models
2014
Parametric sequence comparisons.
1992
Accuracy of Neighbor Joining for n-Taxon Trees
1996
Works of Michael Schöniger being referenced
A local algorithm for DNA sequence alignment with inversions
1992
A Stochastic Model for the Evolution of Autocorrelated DNA Sequences
1994
Toward Assigning Helical Regions in Alignments of Ribosomal RNA and Testing the Appropriateness of Evolutionary Models
1999
Stochastic traits of molecular evolution—Acceptance of point mutations in native actin genes
1990
Neutral adaptation of the genetic code to double-strand coding
1993
Concurrent Neutral Evolution of mRNA Secondary Structures and Encoded Proteins
2000
A local algorithm for dna sequence alignment with inversions
1992
Performance of the Maximum Likelihood, Neighbor Joining, and Maximum Parsimony Methods When Sequence Sites are Not Independent
1995
A Simple Method to Improve the Reliability of Tree Reconstructions
1993