Citation Impact
Citing Papers
Early evolution of animal cell signaling and adhesion genes
2006
Trans-splicing of the C. elegans let-7 primary transcript developmentally regulates let-7 microRNA biogenesis and let-7 family microRNA activity
2019 StandoutNobel
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
2007 StandoutScience
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
2020 Standout
A Sulfilimine Bond Identified in Collagen IV
2009 StandoutScienceNobel
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
The last common ancestor of animals lacked the HIF pathway and respired in low-oxygen environments
2018
Pharmacologic Targeting of Hypoxia-Inducible Factors
2019 StandoutNobel
The evolutionary position of nematodes
2002
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
2006
The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa
2005
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
2014 Standout
Large-scale sequencing and the new animal phylogeny
2006
Homeodomain Subtypes and Functional Diversity
2011
Striking Oxygen Sensitivity of the Peptidylglycine α-Amidating Monooxygenase (PAM) in Neuroendocrine Cells
2015 StandoutNobel
Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis
2004
Acoelomorph flatworms are deuterostomes related to Xenoturbella
2011 Nature
Hedgehog: functions and mechanisms
2008 Standout
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
2013
Identifying localized biases in large datasets: A case study using the avian tree of life
2013
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
2016 Standout
Nested in the Chlorellales or Independent Class? Phylogeny and Classification of the Pedinophyceae (Viridiplantae) Revealed by Molecular Phylogenetic Analyses of Complete Nuclear and Plastid-encoded rRNA Operons
2011
Fossil steroids record the appearance of Demospongiae during the Cryogenian period
2009 Nature
Applications of next-generation sequencing to phylogeography and phylogenetics
2011
Regulation of microRNA biogenesis
2014 Standout
Cnidarian microRNAs frequently regulate targets by cleavage
2014
Wound repair and regeneration
2008 StandoutNature
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
2010 StandoutNature
Biodiversity loss and its impact on humanity
2012 StandoutNature
Microbial Malaise: How Can We Classify the Microbiome?
2015
Evolutionarily Conserved Roles of the Dicer Helicase Domain in Regulating RNA Interference Processing
2014 StandoutNobel
A Catalogue of Eukaryotic Transcription Factor Types, Their Evolutionary Origin, and Species Distribution
2011
Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
2014
The Human Transcription Factors
2018 Standout
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Arthropod phylogeny: An overview from the perspectives of morphology, molecular data and the fossil record
2009
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
2012 Standout
Impacts of biological invasions: what's what and the way forward
2012 Standout
Predicted Secondary Structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): Impact on Sequence Alignment and Phylogeny Estimation
2005
Evolution of striated muscle: Jellyfish and the origin of triploblasty
2005
The transcription factor NF-κB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain
2008
Marine sponges as microbial fermenters
2006
MicroRNAs tell an evo–devo story
2009
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
Insights into Early Extracellular Matrix Evolution: Spongin Short Chain Collagen-Related Proteins Are Homologous to Basement Membrane Type IV Collagens and Form a Novel Family Widely Distributed in Invertebrates
2006
Nearly complete rRNA genes assembled from across the metazoan animals: Effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction
2009
Wnt and TGF-β Expression in the Sponge Amphimedon queenslandica and the Origin of Metazoan Embryonic Patterning
2007
Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
2005 Standout
An Integrated View of Precambrian Eumetazoan Evolution
2009
Metazoan MicroRNAs
2018 Standout
Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200‐Myr missing Precambrian fossil record of siliceous sponge spicules
2009
Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin
2003
Trans‐splicing
2011
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Improving animal phylogenies with genomic data
2011
A Post-Synaptic Scaffold at the Origin of the Animal Kingdom
2007
Inferring ancient divergences requires genes with strong phylogenetic signals
2013 Nature
Ctenophore relationships and their placement as the sister group to all other animals
2017
The Dawn of Developmental Signaling in the Metazoa
2009
The origin and evolution of model organisms
2002
A placozoan affinity for Dickinsonia and the evolution of late Proterozoic metazoan feeding modes
2010
Application of Phylogenetic Networks in Evolutionary Studies
2005 Standout
Tunicates and not cephalochordates are the closest living relatives of vertebrates
2006 StandoutNature
The deep evolution of metazoan microRNAs
2009
Testing the new animal phylogeny: A phylum level molecular analysis of the animal kingdom
2008
Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki
2010
Statistics and Truth in Phylogenomics
2011
The Origin and Diversification of Mitochondria
2017
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
The rise of oxygen in Earth’s early ocean and atmosphere
2014 StandoutNature
Evolutionary Insights into RNA trans-Splicing in Vertebrates
2016
The origin and evolution of cell types
2016
A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia
2012
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
2008 StandoutNature
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
Genesis and Expansion of Metazoan Transcription Factor Gene Classes
2008
Broad phylogenomic sampling improves resolution of the animal tree of life
2008 StandoutNature
A "Neural" Enzyme in Nonbilaterian Animals and Algae: Preneural Origins for Peptidylglycine -Amidating Monooxygenase
2012
PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R
2016
Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria
2006
Phylogenomic Insights into Animal Evolution
2015
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
The Evolution of MicroRNA Pathway Protein Components in Cnidaria
2013
PIWI proteins and PIWI-interacting RNAs in the soma
2014 Nature
NF- B in the Immune Response of Drosophila
2009 StandoutNobel
Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa
2009
Evolutionary history of Coleoptera revealed by extensive sampling of genes and species
2018 Standout
Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran oceans
2010
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
2005
ModelFinder: fast model selection for accurate phylogenetic estimates
2017 Standout
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Assessing the root of bilaterian animals with scalable phylogenomic methods
2009 Standout
Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects
2013
Why biodiversity is important to the functioning of real‐world ecosystems
2008
The Multiple Origins of Complex Multicellularity
2011
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
2011 StandoutScience
How and Why to Build a Unified Tree of Life
2017
Systematics and evolution of Demospongiae
2006
Unringing a bell: metazoan phylogenomics and the partition bootstrap
2009
No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera
2011
The genome sequence of the colonial chordate, Botryllus schlosseri
2013
MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
2011
Darwin's dilemma: the realities of the Cambrian ‘explosion’
2006
Sponge-Associated Microorganisms: Evolution, Ecology, and Biotechnological Potential
2007 Standout
Conserved Genes, Sampling Error, and Phylogenomic Inference
2013
Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation
2017
Mineral skeletogenesis in sponges
2006
UFBoot2: Improving the Ultrafast Bootstrap Approximation
2017 Standout
High-Throughput Genomic Data in Systematics and Phylogenetics
2013
The Caenorhabditis elegans ARIP-4 DNA helicase couples mitochondrial surveillance to immune, detoxification, and antiviral pathways
2022 StandoutNobel
DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists
2007 Standout
Poriferan paraphyly and its implications for Precambrian palaeobiology
2007
Unravelling host and symbiont phylogenies of halichondrid sponges (Demospongiae, Porifera) using a mitochondrial marker
2002
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
2019 Standout
Phylogenomics ofRhodobacteraceaereveals evolutionary adaptation to marine and non-marine habitats
2017
THE IMPORTANCE OF PREADAPTED GENOMES IN THE ORIGIN OF THE ANIMAL BODYPLANS AND THE CAMBRIAN EXPLOSION
2009
The New View of Animal Phylogeny
2004
Possible animal-body fossils in pre-Marinoan limestones from South Australia
2010
Phospholipase A2Enzymes: Physical Structure, Biological Function, Disease Implication, Chemical Inhibition, and Therapeutic Intervention
2011 Standout
Statistical binning enables an accurate coalescent-based estimation of the avian tree
2014 Science
STRIDE: Species Tree Root Inference from Gene Duplication Events
2017
Regulation of mRNA Translation and Stability by microRNAs
2010 Standout
Works of Michaël Manuel being referenced
Sponge paraphyly and the origin of Metazoa
2001
The backbone of the post-synaptic density originated in a unicellular ancestor of choanoflagellates and metazoans
2010
Phylogenomics Revives Traditional Views on Deep Animal Relationships
2009 Standout
Early evolution of symmetry and polarity in metazoan body plans
2008
A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals
2017
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
2011
Comparative analysis of Brachyury T-domains, with the characterization of two new sponge sequences, from a hexactinellid and a calcisponge
2004
Homology of arthropod anterior appendages revealed by Hox gene expression in a sea spider
2006 Nature
Convergent origins and rapid evolution of spliced leader trans-splicing in Metazoa: Insights from the Ctenophora and Hydrozoa
2010
Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution
2004
Clytia hemisphaerica: a jellyfish cousin joins the laboratory
2010
Ordered progression of nematogenesis from stem cells through differentiation stages in the tentacle bulb of Clytia hemisphaerica (Hydrozoa, Cnidaria)
2007
Expansion of the SOX gene family predated the emergence of the Bilateria
2006
Homeobox Gene Diversification in the Calcareous Sponge, Sycon raphanus
2000
The Comparison of β-Thymosin Homologues Among Metazoa Supports an Arthropod-Nematode Clade
2000
Homeodomain proteins belong to the ancestral molecular toolkit of eukaryotes
2007
Exploring the potential of small RNA subunit and ITS sequences for resolving phylogenetic relationships within the phylum Ctenophora
2014
Phylogeny and evolution of calcareous sponges
2006
Phylogeny and Evolution of Calcareous Sponges: Monophyly of Calcinea and Calcaronea, High Level of Morphological Homoplasy, and the Primitive Nature of Axial Symmetry
2003
Somatic stem cells express Piwi and Vasa genes in an adult ctenophore: Ancient association of “germline genes” with stemness
2010
Challenges for biodiversity research in Europe
2011