Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
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A bacterium that degrades and assimilates poly(ethylene terephthalate)
2016 StandoutScience
Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing
2009
Statistical Design and Analysis of RNA Sequencing Data
2010
Bias in random forest variable importance measures: Illustrations, sources and a solution
2007 Standout
Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
2005
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
2009 Standout
FUNC: a package for detecting significant associations between gene sets and ontological annotations
2007 StandoutNobel
A survey of best practices for RNA-seq data analysis
2016 Standout
Conditional variable importance for random forests
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The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation
2020 Standout
Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates
2004
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
A scaling normalization method for differential expression analysis of RNA-seq data
2010 Standout
Genome comparison using Gene Ontology (GO) with statistical testing
2006
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
2004
Using credibility intervals instead of hypothesis tests in SAGE analysis
2003
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate
2003
agriGO: a GO analysis toolkit for the agricultural community
2010 Standout
2011 ACCF/AHA/SCAI Guideline for Percutaneous Coronary Intervention
2011 Standout
ACCF/AHA Clopidogrel Clinical Alert: Approaches to the FDA “Boxed Warning”
2010
mixOmics: An R package for ‘omics feature selection and multiple data integration
2017 Standout
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
2005 Standout
Perioperative Management of Antithrombotic Therapy
2012 Standout
Supervised classification of human microbiota
2010
Use of thiopurines in inflammatory bowel disease: Safety issues
2014
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
Differential expression in SAGE: accounting for normal between-library variation
2003
Angiogenesis: an organizing principle for drug discovery?
2007 Standout
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
2010 Standout
Severe Sepsis and Septic Shock
2013 Standout
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
2007 Standout
An introduction to recursive partitioning: Rationale, application, and characteristics of classification and regression trees, bagging, and random forests.
2009 Standout
Partial least squares: a versatile tool for the analysis of high-dimensional genomic data
2006
A comparison of random forest variable selection methods for classification prediction modeling
2019 Standout
Tag-based approaches for transcriptome research and genome annotation
2005
Global functional profiling of gene expression☆☆This work was funded in part by a Sun Microsystems grant awarded to S.D., NIH Grant HD36512 to S.A.K., a Wayne State University SOM Dean’s Post-Doctoral Fellowship, and an NICHD Contraception and Infertility Loan to G.C.O. Support from the WSU MCBI mode is gratefully appreciated.
2003
A SAGE-based comparison between glomerular and aortic endothelial cells
2005
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Gut metagenome in European women with normal, impaired and diabetic glucose control
2013 StandoutNature
Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders
2013 Standout
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
2007 Standout
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
2004
RNA-Seq: a revolutionary tool for transcriptomics
2008 Standout
GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
2004 Standout
Impact of CYP2C19 variant genotypes on clinical efficacy of antiplatelet treatment with clopidogrel: systematic review and meta-analysis
2011
Cytochrome P450 enzymes in drug metabolism: Regulation of gene expression, enzyme activities, and impact of genetic variation
2013 Standout
Gene selection and classification of microarray data using random forest
2006 Standout
Mapping and quantifying mammalian transcriptomes by RNA-Seq
2008 Standout
Use and misuse of the gene ontology annotations
2008
Vedolizumab as Induction and Maintenance Therapy for Crohn's Disease
2013 Standout
GREAT improves functional interpretation of cis-regulatory regions
2010 Standout
Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis
2012
Analysis of tumor‐associated stromal cells using SCID GFP transgenic mice: contribution of local and bone marrow‐derived host cells
2006
Lipid Nanoparticles Delivering Constitutively Active STING mRNA to Stimulate Antitumor Immunity
2022 StandoutNobel
Ontological analysis of gene expression data: current tools, limitations, and open problems
2005
Plant Nitrogen Assimilation and Use Efficiency
2012 Standout
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
2012 Standout
From Genetic Alterations to Tumor Microenvironment: The Ariadne’s String in Pancreatic Cancer
2020
Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role ofPGC1andNRF1
2003 Standout
Evaluating Microarray-based Classifiers: An Overview
2008
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
2006 Standout
Random forest in remote sensing: A review of applications and future directions
2016 Standout
ACCF/AHA Clopidogrel Clinical Alert: Approaches to the FDA “Boxed Warning”
2010
2014 AHA/ACC Guideline for the Management of Patients With Non–ST-Elevation Acute Coronary Syndromes
2014 Standout
The revival of the Gini importance?
2018 Standout
2011 ACCF/AHA/SCAI Guideline for Percutaneous Coronary Intervention
2011 Standout
A review of feature selection techniques in bioinformatics
2007 Standout
Caenorhabditis elegans responses to bacteria from its natural habitats
2016 StandoutNobel
Effects of Disturbed Flow on Vascular Endothelium: Pathophysiological Basis and Clinical Perspectives
2011 Standout
Works of Michael Man being referenced
TGFβ receptor inhibitor galunisertib is linked to inflammation- and remodeling-related proteins in patients with pancreatic cancer
2019
POWER_SAGE: comparing statistical tests for SAGE experiments
2000
The influence of tumor size and environment on gene expression in commonly used human tumor lines
2004
Genetic Variation in Metabolizing Enzyme and Transporter Genes: Comprehensive Assessment in 3 Major East Asian Subpopulations With Comparison to Caucasians and Africans
2010
Evaluating Methods for Classifying Expression Data
2004
Optimal two-stage strategy for detecting interacting genes in complex diseases
2006
A phase Ib dose-escalation and cohort-expansion study of safety and activity of the transforming growth factor (TGF) β receptor I kinase inhibitor galunisertib plus the anti-PD-L1 antibody durvalumab in metastatic pancreatic cancer.
2019