Citation Impact
Citing Papers
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
2012 Standout
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
2012 Standout
A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity
2012 StandoutScienceNobel
Cytoplasmic ankyrin repeats of transient receptor potential A1 (TRPA1) dictate sensitivity to thermal and chemical stimuli
2011 StandoutNobel
UCHIME improves sensitivity and speed of chimera detection
2011 Standout
The accuracy of several multiple sequence alignment programs for proteins
2006
Proteome-wide evidence for enhanced positive Darwinian selection within intrinsically disordered regions in proteins
2011
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
Fast Statistical Alignment
2009
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
2016 Standout
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment
2010
Regulation of microRNA function in animals
2018 Standout
Hive plots--rational approach to visualizing networks
2011
Recent developments in the MAFFT multiple sequence alignment program
2008 Standout
Sequence comparison and protein structure prediction
2006
Visualization of omics data for systems biology
2010
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
2010 Standout
A network-biology perspective of microRNA function and dysfunction in cancer
2016
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
2014
Protein Insertions and Deletions Enabled by Neutral Roaming in Sequence Space
2013
ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software
2014 Standout
Pore region of TRPV3 ion channel is specifically required for heat activation
2008 StandoutNobel
DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs
2010 Standout
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
PHASTER: a better, faster version of the PHAST phage search tool
2016 Standout
SCENIC: single-cell regulatory network inference and clustering
2017 Standout
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 Standout
KEGG for integration and interpretation of large-scale molecular data sets
2011 Standout
M-Coffee: combining multiple sequence alignment methods with T-Coffee
2006
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
Evolution at two levels of gene expression in yeast
2013
Single Residues in the Outer Pore of TRPV1 and TRPV3 Have Temperature-Dependent Conformations
2013 StandoutNobel
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
2011 Standout
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
2010
Class of Multiple Sequence Alignment Algorithm Affects Genomic Analysis
2012
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
2008 Standout
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
2010 Standout
ThermoTRP channels as modular proteins with allosteric gating
2007
Quality measures for protein alignment benchmarks
2010
KEGG for representation and analysis of molecular networks involving diseases and drugs
2009 Standout
An open source chimera checker for the fungal ITS region
2010
GeneTrail--advanced gene set enrichment analysis
2007
Multiple sequence alignments
2005
Temperature-induced opening of TRPV1 ion channel is stabilized by the pore domain
2010 StandoutNobel
Directionality of Temperature Activation in Mouse TRPA1 Ion Channel Can Be Inverted by Single-Point Mutations in Ankyrin Repeat Six
2014 StandoutNobel
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
A Yeast Genetic Screen Reveals a Critical Role for the Pore Helix Domain in TRP Channel Gating
2008 StandoutNobel
Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments
2007
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
2011
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks
2015
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family
2011
Multiple alignment of protein sequences with repeats and rearrangements
2006
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
2007 Standout
Phylogenetic Supermatrix Analysis of GenBank Sequences from 2228 Papilionoid Legumes
2006
VirSorter: mining viral signal from microbial genomic data
2015
The backbone of bipartite projections: Inferring relationships from co-authorship, co-sponsorship, co-attendance and other co-behaviors
2014
Impurities in tokamaks
1984
Fake news on Twitter during the 2016 U.S. presidential election
2019 StandoutScience
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Observation ofz-dependent impurity accumulation in the PBX tokamak
1987 StandoutNobel
A Rapid Bootstrap Algorithm for the RAxML Web Servers
2008 Standout
Cofactor specificity motifs and the induced fit mechanism in class I ketol-acid reductoisomerases
2015 StandoutNobel
Segment-based multiple sequence alignment
2008
Two amino acid residues determine 2-APB sensitivity of the ion channels TRPV3 and TRPV4
2009 StandoutNobel
Toward the estimation of the absolute quality of individual protein structure models
2010 Standout
Measuring the distance between multiple sequence alignments
2011
KEGG: new perspectives on genomes, pathways, diseases and drugs
2016 Standout
Visual Unrolling of Network Evolution and the Analysis of Dynamic Discourse
2003
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 Standout
Global microRNA level regulation of EGFR‐driven cell‐cycle protein network in breast cancer
2012
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
2009
Searching for intellectual turning points: Progressive knowledge domain visualization
2004 Standout
Works of Michael Kaufmann being referenced
Drawing graphs: methods and models
2001
An integer linear programming approach for finding deregulated subgraphs in regulatory networks
2011
BNDB – The Biochemical Network Database
2007
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases
2012
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
2008
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
2005
BN++ – A Biological Information System
2006
A systematic approach to the one-mode projection of bipartite graphs
2011
Control of particle and energy transport across the boundary of a Tokamak plasma
1984
Multi-omics enrichment analysis using the GeneTrail2 web service
2016
An Efficient Implementation of Sugiyama's Algorithm for Layered Graph Drawing
2005