Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water
2017 StandoutScienceNobel
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae
2012 StandoutScienceNobel
Recognition of Cognate Transfer RNA by the 30 S Ribosomal Subunit
2001 StandoutScienceNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
PISCES: a protein sequence culling server
2003
De Novo Prediction of Three-dimensional Structures for Major Protein Families
2002 StandoutNobel
GROMACS: Fast, flexible, and free
2005 Standout
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
Recognizing Native Folds by the Arrangement of Hydrophobic and Polar Residues
1995 StandoutNobel
Perspectives in protein-fold recognition
1997
NMR structure of the mouse prion protein domain PrP(121–231)
1996 StandoutNatureNobel
The Protein Data Bank
2000 Standout
Conservation and prediction of solvent accessibility in protein families
1994
Exploring conformational space with a simple lattice model for protein structure
1994 StandoutNobel
From fold predictions to function predictions: Automation of functional site conservation analysis for functional genome predictions
1999
GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences
1999
Automated genome sequence analysis and annotation.
1999
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
π-Stacking Interactions
1998
Factors affecting the ability of energy functions to discriminate correct from incorrect folds
1997 StandoutNobel
NMR: prediction of molecular alignment from structure using the PALES software
2008
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
2002
NetOglyc: Prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility
1998
Automated main-chain model building by template matching and iterative fragment extension
2002
Shear numbers of protein β-barrels: definition refinements and statistics 1 1Edited by J. M. Thornton
1998
The hydrophobic-staple motif and a role for loop-residues in α-helix stability and protein folding
1995
MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 Standout
A structural alphabet for local protein structures: Improved prediction methods
2005
Progress in fold recognition
1995
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Gene Ontology: tool for the unification of biology
2000 Standout
Protein fold recognition using sequence‐derived predictions
1996
Completeness in structural genomics.
2001
Evaluation of Structural and Evolutionary Contributions to Deleterious Mutation Prediction
2002 StandoutNobel
Comparison of protein structures determined by NMR in solution and by X-ray diffraction in single crystals
1992
Protein structure and the sequential structure of mRNA: α-Helix and β-sheet signals at the nucleotide level
1996
Defining a similarity threshold for a functional protein sequence pattern: The signal peptide cleavage site
1996
Redefining the goals of protein secondary structure prediction
1994
The complexity and accuracy of discrete state models of protein structure
1995 StandoutNobel
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
The EMBL Nucleotide Sequence Database
2000
Potential energy functions for threading
1996
The coming of age of de novo protein design
2016 StandoutNatureNobel
The ASTRAL compendium for protein structure and sequence analysis
2000
The EMBL data library
1988
An improved pair potential to recognize native protein folds
1994
Searching protein structure databases has come of age
1994
A Combined Transmembrane Topology and Signal Peptide Prediction Method
2004 Standout
STITCH 4: integration of protein–chemical interactions with user data
2013
The FoldX web server: an online force field
2005 Standout
The HSSP database of protein structure-sequence alignments
1997
Contact order and ab initio protein structure prediction
2002 StandoutNobel
Improved Prediction of Signal Peptides: SignalP 3.0
2004 Standout
Computational redesign of endonuclease DNA binding and cleavage specificity
2006 StandoutNatureNobel
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
Assessing the accuracy of prediction algorithms for classification: an overview
2000 StandoutNobel
Prospects for ab initio protein structural genomics
2001 StandoutNobel
De novo design of a fluorescence-activating β-barrel
2018 StandoutNatureNobel
An automated classification of the structure of protein loops
1997
Evaluation of protein models by atomic solvation preference
1992
Prediction of local structure in proteins using a library of sequence-structure motifs
1998 StandoutNobel
The tyrosine corner: A feature of most greek key β‐barrel proteins
1994
Combining evolutionary information and neural networks to predict protein secondary structure
1994
Recognition of related proteins by iterative template refinement (ITR)
1994
Maximum Discrimination Hidden Markov Models of Sequence Consensus
1995
Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential?
2009
MOLMOL: A program for display and analysis of macromolecular structures
1996 StandoutNobel
Local water bridges and protein conformational stability
1999
How representative are the known structures of the proteins in a complete genome? A comprehensive structural census
1998
Prediction of lipoprotein signal peptides in Gram‐negative bacteria
2003
A method to obtain a near‐minimal‐volume molecular simulation of a macromolecule, using periodic boundary conditions and rotational constraints
2004
DNA structure in human RNA polymerase II promoters 1 1Edited by J. Karn
1998 StandoutNobel
The HSSP database of protein structure-sequence alignments and family profiles
1998
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
2007 Standout
Blind predictions of local protein structure in CASP2 targets using the I‐sites library
1997 StandoutNobel
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions
1997 StandoutNobel
Energy Functions that Discriminate X-ray and Near-native Folds from Well-constructed Decoys
1996 StandoutNobel
Prion (PrPSc)-specific epitope defined by a monoclonal antibody
1997 StandoutNatureNobel
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1997 Standout
PROTEIN FOLDING: The Endgame
1997 StandoutNobel
A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites
1997
In Vivo Imaging of Membrane-Associated Glycans in Developing Zebrafish
2008 StandoutScienceNobel
Structure-based prediction of DNA target sites by regulatory proteins
1999
Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
2001
Blind predictions of local protein structure in CASP2 targets using the I-sites library
1997 StandoutNobel
Rules for α-Helix Termination by Glycine
1994 Science
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
Prediction of protein secondary structure at 80% accuracy
2000
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
Trapping a transition state in a computationally designed protein bottle
2015 StandoutScienceNobel
Improved prediction of protein secondary structure by use of sequence profiles and neural networks.
1993
Ancient conserved regions in gene sequences
1994
Nucleation of COPII Vesicular Coat Complex by Endoplasmic Reticulum to Golgi Vesicle SNAREs
1998 StandoutScienceNobel
Coupled prediction of protein secondary and tertiary structure
2003 StandoutNobel
Cation-π interactions in structural biology
1999 Standout
Brute-Force Molecular Dynamics Simulations of Villin Headpiece: Comparison with NMR Parameters
2003
A structural census of the current population of protein sequences
1997 StandoutNobel
Residue – Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading
1996
Works of Michael E. Scharf being referenced
Correlation of cellulase gene expression and cellulolytic activity throughout the gut of the termite Reticulitermes flavipes
2007
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III
1992
Selection of representative protein data sets
1992
Prediction of Protein Structure by Evaluation of Sequence-structure Fitness
1993
The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies
1995
The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value
1996
GeneQuiz: a workbench for sequence analysis.
1994