Standout Papers
Citation Impact
Citing Papers
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
2012 Standout
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
2005 Standout
Modulation of immune cell reactivity with cis -binding Siglec agonists
2021 StandoutNobel
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Pattern Alternating Maximization Algorithm for High-Dimensional Missing Data
2010
A Simple Method for Finding Molecular Signatures from Gene Expression Data
2004
WGCNA: an R package for weighted correlation network analysis
2008 Standout
Adjusting for social risk factors impacts performance and penalties in the hospital readmissions reduction program
2019
Hallmarks of Cancer: The Next Generation
2011 Standout
Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
2007
A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
2009
Genetic effects on gene expression across human tissues
2017 StandoutNature
A Bayesian missing value estimation method for gene expression profile data
2003
Rewiring of the Fruit Metabolome in Tomato Breeding
2018 Standout
Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence
2012 StandoutNatureNobel
GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists
2005
RNA-based recognition and targeting: sowing the seeds of specificity
2017 StandoutNobel
Lymphangiogenesis: Molecular Mechanisms and Future Promise
2010 Standout
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
The REDCap consortium: Building an international community of software platform partners
2019 Standout
Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data
2002
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
2017 StandoutNature
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Clustering gene-expression data with repeated measurements
2003
Metazoan MicroRNAs
2018 Standout
Disparate effects of telomere attrition on gene expression during replicative senescence of human mammary epithelial cells cultured under different conditions
2004
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Distinct Sets of Genetic Alterations in Melanoma
2005 Standout
Revealing the human mucinome
2022 StandoutNobel
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates
2012 Standout
Multiple small RNA pathways regulate the silencing of repeated and foreign genes in C. elegans
2013 StandoutNobel
Quantitative mass spectrometry in proteomics: a critical review
2007
A prediction-based resampling method for estimating the number of clusters in a dataset
2002
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
2015 Standout
Understanding multicellular function and disease with human tissue-specific networks
2015
MicroRNA expression profiles classify human cancers
2005 StandoutNatureNobel
Inflammatory Manifestations of Experimental Lymphatic Insufficiency
2006
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
2006 Standout
Assessing the limits of genomic data integration for predicting protein networks
2005
Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs
2013
Clinical research informatics: a conceptual perspective
2012
Lysosome-targeting chimaeras for degradation of extracellular proteins
2020 StandoutNatureNobel
Comprehensive Integration of Single-Cell Data
2019 Standout
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
2008 Standout
Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19
2020 Standout
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Cross-correlations of American baby names
2015 StandoutNobel
Dissecting racial bias in an algorithm used to manage the health of populations
2019 StandoutScience
Breast cancer classification and prognosis based on gene expression profiles from a population-based study
2003 Standout
Prediction of genome-wide DNA methylation in repetitive elements
2017
Spectral Regularization Algorithms for Learning Large Incomplete Matrices.
2010
Repeated observation of breast tumor subtypes in independent gene expression data sets
2003 Standout
Diversity of gene expression in adenocarcinoma of the lung
2001
Lysosomal cathepsin D mediates endogenous mucin glycodomain catabolism in mammals
2022 StandoutNobel
Clinical Research Informatics: Survey of Recent Advances and Trends in a Maturing Field
2013
Predicting effective microRNA target sites in mammalian mRNAs
2015 Standout
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
2001 Standout
Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors
2002
MissForest—non-parametric missing value imputation for mixed-type data
2011 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides
2018
Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories
2007
NOISE-ROBUST SOFT CLUSTERING OF GENE EXPRESSION TIME-COURSE DATA
2005
Regularization and Variable Selection Via the Elastic Net
2005 Standout
Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast
2007
Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
2002 Standout
Exploring the functional landscape of gene expression: directed search of large microarray compendia
2007
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
Multiple Click-Selective tRNA Synthetases Expand Mammalian Cell-Specific Proteomics
2018 StandoutNobel
E3 ubiquitin ligase Mindbomb 1 facilitates nuclear delivery of adenovirus genomes
2020 StandoutNobel
Works of Michael Cantor being referenced
Integrating Data On Social Determinants Of Health Into Electronic Health Records
2018
Missing value estimation methods for DNA microarrays
2001 Standout
Translational informatics: an industry perspective
2012
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
2013
Putting data integration into practice: using biomedical terminologies to add structure to existing data sources.
2003
Mining OMIM for insight into complex diseases.
2004