Citation Impact

Citing Papers

Potent CRISPR-Cas9 inhibitors from Staphylococcus genomes
2020 StandoutNobel
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
2017 Standout
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention
2021 StandoutNobel
Rapid and automated design of two-component protein nanomaterials using ProteinMPNN
2024 StandoutNobel
Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14
2021 StandoutNobel
Updated benchmarking of variant effect predictors using deep mutational scanning
2023
Piezo1 Channels Are Inherently Mechanosensitive
2016 StandoutNobel
De novo design of immunoglobulin-like domains
2022 StandoutNobel
Targeting microbial biofilms: current and prospective therapeutic strategies
2017 Standout
Discoveries in structure and physiology of mechanically activated ion channels
2020 StandoutNatureNobel
Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
2015 Standout
Chronic lung infection by Pseudomonas aeruginosa biofilm is cured by L-Methionine in combination with antibiotic therapy
2015
JPred4: a protein secondary structure prediction server
2015
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Crystal structure of the Ego1-Ego2-Ego3 complex and its role in promoting Rag GTPase-dependent TORC1 signaling
2015
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
2017 Standout
Accurate prediction of helix interactions and residue contacts in membrane proteins
2016
Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
2019 Standout
Piezos thrive under pressure: mechanically activated ion channels in health and disease
2017 StandoutNobel
mTOR Signaling in Growth, Metabolism, and Disease
2017 Standout
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
2016
Structure of the mechanically activated ion channel Piezo1
2017 StandoutNatureNobel
Applications of contact predictions to structural biology
2017 StandoutNobel
Structured States of Disordered Proteins from Genomic Sequences
2016
De novo design of a non-local β-sheet protein with high stability and accuracy
2018 StandoutNobel
Architecture of the mammalian mechanosensitive Piezo1 channel
2015 Nature
Endogenous Piezo1 Can Confound Mechanically Activated Channel Identification and Characterization
2017 StandoutNobel
Computational approaches to predict protein functional families and functional sites
2021
IFITM3 directly engages and shuttles incoming virus particles to lysosomes
2018 StandoutNobel
IFITM 3 requires an amphipathic helix for antiviral activity
2017
SignalP 6.0 predicts all five types of signal peptides using protein language models
2022 Standout
ProFET: Feature engineering captures high-level protein functions
2015
Learned protein embeddings for machine learning
2018 StandoutNobel
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning
2021
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
MSAViewer: interactive JavaScript visualization of multiple sequence alignments
2016
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
2019 StandoutNobel
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies
2020
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel

Works of Michael Bernhofer being referenced

Embeddings from protein language models predict conservation and variant effects
2021
ProNA2020 predicts protein–DNA, protein–RNA, and protein–protein binding proteins and residues from sequence
2020
PredictProtein—an open resource for online prediction of protein structural and functional features
2014
TMSEG: Novel prediction of transmembrane helices
2016
Evaluation of transmembrane helix predictions in 2014
2014
Rankless by CCL
2026