Citation Impact
Citing Papers
The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin
2015 Standout
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
Finite-state transducers in language and speech processing
1997
Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data
2001 Standout
Critical contribution of 3′ non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA
2022 StandoutNobel
Improved metagenomic analysis with Kraken 2
2019 Standout
A bacterial pathogen induces developmental slowing by high reactive oxygen species and mitochondrial dysfunction in Caenorhabditis elegans
2023 StandoutNobel
Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
2011 Standout
The RNA Binding Protein Quaking Regulates Formation of circRNAs
2015 Standout
Determining minimum energy conformations of polypeptides by dynamic programming
1990
The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems
2013 StandoutNobel
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
Tandem repeats finder: a program to analyze DNA sequences
1999 Standout
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
2018 Standout
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
PDB-based protein loop prediction: parameters for selection and methods for optimization
1997 StandoutNobel
Versatile and open software for comparing large genomes
2004 Standout
BLAST+: architecture and applications
2009 Standout
REPuter: the manifold applications of repeat analysis on a genomic scale
2001 Standout
A Functional Mini-Integrase in a Two-Protein Type V-C CRISPR System
2019 StandoutNobel
Modeling of loops in protein structures
2000 Standout
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
2014 StandoutNobel
Widespread Translational Remodeling during Human Neuronal Differentiation
2017 StandoutNobel
Introducing difference recurrence relations for faster semi-global alignment of long sequences
2018
Mash: fast genome and metagenome distance estimation using MinHash
2016 Standout
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
2009
RNA sequencing uncovers antisense RNAs and novel small RNAs inStreptococcus pyogenes
2015 StandoutNobel
Quadratic Stochastic Euclidean Bipartite Matching Problem
2015
Protecting genome integrity during CRISPR immune adaptation
2016 StandoutNobel
One-loop diagrams in the random Euclidean matching problem
2017 StandoutNobel
Prediction of protein function from protein sequence and structure
2003
A Normalized Levenshtein Distance Metric
2007 Standout
Nucleic Acid Extraction and Sequencing from Low-Biomass Synthetic Mars Analog Soils for In Situ Life Detection
2019 StandoutNobel
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences
2006
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Self-organization in vision: stochastic clustering for image segmentation, perceptual grouping, and image database organization
2001
Graph Clustering and Minimum Cut Trees
2004
Three Partition Refinement Algorithms
1987 Standout
RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B
2018 StandoutNobel
Protein folding
1991 StandoutNobel
Graph clustering
2007 Standout
A guided tour to approximate string matching
2001 Standout
False data injection attacks against state estimation in electric power grids
2011 Standout
Quality control and preprocessing of metagenomic datasets
2011 Standout
Compressed Suffix Arrays and Suffix Trees with Applications to Text Indexing and String Matching
2005
Cutadapt removes adapter sequences from high-throughput sequencing reads
2011 Standout
RNA-dependent RNA targeting by CRISPR-Cas9
2018 StandoutNobel
Compressed Suffix Arrays and Suffix Trees with Applications to Text Indexing and String Matching Read More: http://epubs.siam.org/doi/abs/10.1137/S0097539702402354
2005
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Fast and accurate short read alignment with Burrows–Wheeler transform
2009 Standout
Comparative Protein Structure Modeling of Genes and Genomes
2000 Standout
Approximate string matching with suffix automata
1993
Progress in Ab Initio QM/MM Free-Energy Simulations of Electrostatic Energies in Proteins: Accelerated QM/MM Studies of pKa, Redox Reactions and Solvation Free Energies
2008 StandoutNobel
Mugsy: fast multiple alignment of closely related whole genomes
2010
Staufen Negatively Modulates MicroRNA Activity in Caenorhabditis elegans
2016 StandoutNobel
Fast approximate energy minimization via graph cuts
2001 Standout
Inverse Kinematics in Biology: The Protein Loop Closure Problem
2005 StandoutNobel
All Highest Scoring Paths in Weighted Grid Graphs and Their Application to Finding All Approximate Repeats in Strings
1998
Approximate string-matching with q-grams and maximal matches
1992
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
Reducing the space requirement of suffix trees
1999
Gradient-based learning applied to document recognition
1998 Standout
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
On-line construction of suffix trees
1995 Standout
Mutiple Bad Data Identwication for State Estimation by Combinatorial Oftimization
1986
Works of Maxime Crochemore being referenced
Zones of low entropy in genomic sequences
1999
An optimal algorithm for computing the repetitions in a word
1981
Jewels of Stringology
2002
Speeding up two string-matching algorithms
1994
Combinatorial algorithms
1983
Two-way string-matching
1991
A fast and practical bit-vector algorithm for the Longest Common Subsequence problem
2001
Partitioning a graph in O(¦A¦log2¦V¦)
1982
Algorithms on Strings
2007
Transducers and repetitions
1986