Citation Impact
Citing Papers
Computational protein design enables a novel one-carbon assimilation pathway
2015 StandoutNobel
Programmable RNA recognition using a CRISPR-associated Argonaute
2018 StandoutNobel
MicroRNA-155 is induced during the macrophage inflammatory response
2007 StandoutNobel
p53 Dynamics Control Cell Fate
2012 Science
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
2007
Metabolomics‐driven quantitative analysis of ammonia assimilation in E. coli
2009
De novo design of modular and tunable protein biosensors
2021 StandoutNatureNobel
MyD88 Adapter-like (Mal)/TIRAP Interaction with TRAF6 Is Critical for TLR2- and TLR4-mediated NF-κB Proinflammatory Responses
2009
Fluopack screening platform for unbiased cellular phenotype profiling
2020
Structural and functional analysis of cellular networks with CellNetAnalyzer
2007
Hallmarks of Cancer: The Next Generation
2011 Standout
Applications of genome‐scale metabolic reconstructions
2009
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
2003
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
2007
A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging
2018
Evolutionary programming as a platform for in silico metabolic engineering
2005
Extracellular vesicles are the Trojan horses of viral infection
2016
Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference
2015
Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
2003
Constraints-based genome-scale metabolic simulation for systems metabolic engineering
2009
A view on drug resistance in cancer
2019 StandoutNature
Necroptosis and its role in inflammation
2015 StandoutNature
Chemical Technologies for Probing Glycans
2006 StandoutNobel
Influence of Metabolism on Epigenetics and Disease
2013 StandoutNobel
Innate Immunity Gone Awry: Linking Microbial Infections to Chronic Inflammation and Cancer
2006
Single-cell chromatin accessibility reveals principles of regulatory variation
2015 Nature
Functional cartography of complex metabolic networks
2005 StandoutNature
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
2003
Evolutionary Convergence of Pathway-Specific Enzyme Expression Stoichiometry
2018
Advantages and limitations of current network inference methods
2010
MODOMICS: a database of RNA modification pathways—2013 update
2012
Intricate relationships between naked viruses and extracellular vesicles in the crosstalk between pathogen and host
2018
A protocol for generating a high-quality genome-scale metabolic reconstruction
2010
eQuilibrator--the biochemical thermodynamics calculator
2011
Transformation by the (R)-enantiomer of 2-hydroxyglutarate linked to EGLN activation
2012 StandoutNatureNobel
Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions
2005
Pattern Recognition Receptors and Inflammation
2010 Standout
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
2006
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production
2013
A biological approach to computational models of proteomic networks
2006
OptStrain: A computational framework for redesign of microbial production systems
2004
Hierarchical thinking in network biology: the unbiased modularization of biochemical networks
2004
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
2003
Nuclear factor-κB in cancer development and progression
2006 StandoutNature
Digital Quantification of Proteins and mRNA in Single Mammalian Cells
2016
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
2013 Nature
A Broad-Spectrum Inhibitor of CRISPR-Cas9
2017 StandoutNobel
Genome-scale models of microbial cells: evaluating the consequences of constraints
2004
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
2008
Candidate Metabolic Network States in Human Mitochondria
2004
Paracrine Induction of HIF by Glutamate in Breast Cancer: EglN1 Senses Cysteine
2016 StandoutNobel
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
2001
Immunity, Inflammation, and Cancer
2010 Standout
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
2011
SirT1 modulates the estrogen–insulin-like growth factor-1 signaling for postnatal development of mammary gland in mice
2007
Bacterial redox sensors
2004
Towards multidimensional genome annotation
2006
Suppression of inflammation by a synthetic histone mimic
2010 StandoutNatureNobel
Linear ubiquitination prevents inflammation and regulates immune signalling
2011 Nature
Transcriptional control of the inflammatory response
2009
Principles and Strategies for Developing Network Models in Cancer
2011
TLR signaling
2007
The Systems Biology of Glycosylation
2004
Reconstruction of biochemical networks in microorganisms
2008
The present and future role of microfluidics in biomedical research
2014 StandoutNature
Single-Cell Imaging of Caspase-1 Dynamics Reveals an All-or-None Inflammasome Signaling Response
2014
Origin and physiological roles of inflammation
2008 StandoutNature
The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules
2009 Nobel
Cleaning up with genomics: applying molecular biology to bioremediation
2003
Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering
2016 StandoutNobel
What is flux balance analysis?
2010 Standout
The role of senescent cells in ageing
2014 StandoutNature
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Regulation of CRISPR–Cas adaptive immune systems
2017
Cancer-related inflammation
2008 StandoutNature
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling
2007 Standout
Global quantification of mammalian gene expression control
2011 StandoutNature
Comprehensive Integration of Single-Cell Data
2019 Standout
Uniform Sampling of Steady-State Flux Spaces: Means to Design Experiments and to Interpret Enzymopathies
2004
Engineers are from PDMS-land, Biologists are from Polystyrenia
2012
TMEM41B Is a Pan-flavivirus Host Factor
2020 StandoutNobel
Antibacterial drug discovery in the resistance era
2016 StandoutNature
NF-κB, inflammation, immunity and cancer: coming of age
2018 Standout
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The Epithelial-Mesenchymal Transition Generates Cells with Properties of Stem Cells
2008 Standout
Integrating cell-signalling pathways with NF-κB and IKK function
2006 Standout
Genome-scale models of bacterial metabolism: reconstruction and applications
2008
Extracellular electron transfer via microbial nanowires
2005 StandoutNature
In vivo 3′-to-5′ exoribonuclease targetomes of Streptococcus pyogenes
2018 StandoutNobel
Slc15a4, AP-3, and Hermansky-Pudlak syndrome proteins are required for Toll-like receptor signaling in plasmacytoid dendritic cells
2010 StandoutNobel
Rapid Prototyping of Arrayed Microfluidic Systems in Polystyrene for Cell-Based Assays
2011
MicroRNA-155 Promotes Resolution of Hypoxia-Inducible Factor 1α Activity during Prolonged Hypoxia
2011
Development of Monocytes, Macrophages, and Dendritic Cells
2010 StandoutScience
Experimental and Computational Assessment of Conditionally Essential Genes inEscherichia coli
2006
Rewiring MAP kinases in Saccharomyces cerevisiae to regulate novel targets through ubiquitination
2016
Systems Biology: A Brief Overview
2002 StandoutScience
Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses
2011 StandoutNobel
Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees
2005 StandoutScienceNobel
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Follicular Helper CD4 T Cells (TFH)
2011 Standout
Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks
2018
Dialogue between E. coli free radical pathways and the mitochondria of C. elegans
2015 StandoutNobel
Systems approach to refining genome annotation
2006
Crystal structure of Toll-like receptor adaptor MAL/TIRAP reveals the molecular basis for signal transduction and disease protection
2011 StandoutNobel
Regulation of apoptosis by the circadian clock through NF-κB signaling
2011 StandoutNobel
Analysis of optimality in natural and perturbed metabolic networks
2002
Properties of Metabolic Networks: Structure versus Function
2004
The biology , function , and biomedical applications of exosomes
2020 StandoutScience
GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions
2009
Growth Factors, Matrices, and Forces Combine and Control Stem Cells
2009 StandoutScience
De novo design of protein logic gates
2020 StandoutScienceNobel
Works of Markus W. Covert being referenced
Identifying constraints that govern cell behavior: a key to converting conceptual to computational models in biology?
2003
A Forward-Genetic Screen and Dynamic Analysis of Lambda Phage Host-Dependencies Reveals an Extensive Interaction Network and a New Anti-Viral Strategy
2010
Transcriptional Regulation in Constraints-based Metabolic Models of Escherichia coli
2002
Single-cell NF-κB dynamics reveal digital activation and analogue information processing
2010 Nature
Deep learning for cellular image analysis
2019
Reconciling Gene Expression Data With Known Genome-Scale Regulatory Network Structures
2003
A Whole-Cell Computational Model Predicts Phenotype from Genotype
2012
The virus as metabolic engineer
2010
Metabolic modeling of microbial strains in silico
2001
Metabolic modelling of microbes: the flux‐balance approach
2002
Reconstruction of microbial transcriptional regulatory networks
2003
Integrating high-throughput and computational data elucidates bacterial networks
2004 Nature
Constraints-based models: Regulation of Gene Expression Reduces the Steady-state Solution Space
2003
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
2016
High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells
2014
Regulation of Gene Expression in Flux Balance Models of Metabolism
2001
Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting
2012
Genome-Scale Metabolic Model of Helicobacter pylori 26695
2002
Achieving Stability of Lipopolysaccharide-Induced NF-κB Activation
2005 ScienceNobel
Integrating metabolic, transcriptional regulatory and signal transduction models inEscherichia coli
2008
Nonlytic viral spread enhanced by autophagy components
2014
A Noisy Paracrine Signal Determines the Cellular NF-κB Response to Lipopolysaccharide
2009