Citation Impact
Citing Papers
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
2021 Standout
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
Optimal Dissociation Methods Differ for N - and O -Glycopeptides
2020 StandoutNobel
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
2014 Standout
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumors
2018
Proteome Wide Purification and Identification of O -GlcNAc-Modified Proteins Using Click Chemistry and Mass Spectrometry
2013
Tissue specificity and the human protein interaction network
2009
Sialic Acid-focused Quantitative Mouse Serum Glycoproteomics by Multiple Reaction Monitoring Assay
2010
A survey of best practices for RNA-seq data analysis
2016 Standout
The Ensembl Variant Effect Predictor
2016 Standout
Comprehensive analyses of tumor immunity: implications for cancer immunotherapy
2016 Standout
An expression atlas of human primary cells: inference of gene function from coexpression networks
2013
Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni
2011 Standout
In silico prediction of protein-protein interactions in human macrophages
2014 Standout
The One Hour Yeast Proteome
2013
Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag)
2018 StandoutNobel
Visualization of omics data for systems biology
2010
Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct
2015
CD22 blockade restores homeostatic microglial phagocytosis in ageing brains
2019 StandoutNatureNobel
A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi
2009
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
2016 Standout
APPRIS: annotation of principal and alternative splice isoforms
2012
Microglial brain region−dependent diversity and selective regional sensitivities to aging
2016
A footprint of desiccation tolerance in the genome of Xerophyta viscosa
2017
TRIM25 Enhances the Antiviral Action of Zinc-Finger Antiviral Protein (ZAP)
2017 StandoutNobel
xCell: digitally portraying the tissue cellular heterogeneity landscape
2017 Standout
MSpectraAI: a powerful platform for deciphering proteome profiling of multi-tumor mass spectrometry data by using deep neural networks
2020
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
2014 Standout
Isotope-targeted glycoproteomics (IsoTaG): a mass-independent platform for intact N- and O-glycopeptide discovery and analysis
2015 StandoutNobel
O-GlcNAcylation site mapping by (azide-alkyne) click chemistry and mass spectrometry following intensive fractionation of skeletal muscle cells proteins
2018
Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry
2020 StandoutNobel
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Measuring the multifaceted roles of mucin-domain glycoproteins in cancer
2022 StandoutNobel
Isotope-targeted glycoproteomics (IsoTaG) analysis of sialylated N- and O-glycopeptides on an Orbitrap Fusion Tribrid using azido and alkynyl sugars
2016 StandoutNobel
Human Urinary Exosomes as Innate Immune Effectors
2014
2016 update of the PRIDE database and its related tools
2015 Standout
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Next-generation proteomics: towards an integrative view of proteome dynamics
2012
Anti-schistosomal Intervention Targets Identified by Lifecycle Transcriptomic Analyses
2009
A metabolic labeling approach for glycoproteomic analysis reveals altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
2016 StandoutNobel
Pseudogene-derived lncRNAs: emerging regulators of gene expression
2015
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
Endogenous microRNA sponges: evidence and controversy
2016 Standout
Review of deep learning: concepts, CNN architectures, challenges, applications, future directions
2021 Standout
A Face in the Crowd: Recognizing Peptides Through Database Search
2011
Analyzing nested experimental designs—A user-friendly resampling method to determine experimental significance
2022 StandoutNobel
O-GlcNAc modification of small heat shock proteins enhances their anti-amyloid chaperone activity
2021 StandoutNobel
Antibacterial drug discovery in the resistance era
2016 StandoutNature
Neuroinflammation and microglial activation in Alzheimer disease: where do we go from here?
2020 Standout
Network visualization and analysis of gene expression data using BioLayout Express3D
2009
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
2012
Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally co-expressed genes
2012
Glycoproteomics
2022 StandoutNobel
Improvements to the Percolator Algorithm for Peptide Identification from Shotgun Proteomics Data Sets
2009
Overview of Extracellular Vesicles, Their Origin, Composition, Purpose, and Methods for Exosome Isolation and Analysis
2019 Standout
Exploring the potential of public proteomics data
2015
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
MS-Decipher: a user-friendly proteome database search software with an emphasis on deciphering the spectra of O-linked glycopeptides
2022
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Isotope Targeted Glycoproteomics (IsoTaG) to Characterize Intact, Metabolically Labeled Glycopeptides from Complex Proteomes
2016 StandoutNobel
Protein Analysis by Shotgun/Bottom-up Proteomics
2013
IQuant: An automated pipeline for quantitative proteomics based upon isobaric tags
2014
Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
2014
Microglia Function in the Central Nervous System During Health and Neurodegeneration
2017 Standout
Traditional Chinese medicine as a cancer treatment: Modern perspectives of ancient but advanced science
2019 Standout
Improved Protein and PTM Characterization with a Practical Electron-Based Fragmentation on Q-TOF Instruments
2021
Characterization of the Glycosylation Site of Human PSA Prompted by Missense Mutation using LC–MS/MS
2015
Algorithms and design strategies towards automated glycoproteomics analysis
2016
Transcriptomic analysis of mononuclear phagocyte differentiation and activation
2014
Tools to Covisualize and Coanalyze Proteomic Data with Genomes and Transcriptomes: Validation of Genes and Alternative mRNA Splicing
2013
Measurement of Organ-Specific and Acute-Phase Blood Protein Levels in Early Lyme Disease
2019 StandoutNobel
Microglial M1/M2 polarization and metabolic states
2015 Standout
Digging More Missing Proteins Using an Enrichment Approach with ProteoMiner
2017
Chemical Glycoproteomics
2016 StandoutNobel
Works of Markus Brosch being referenced
Enhanced Peptide Identification by Electron Transfer Dissociation Using an Improved Mascot Percolator
2012
Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and “resurrected” pseudogenes in the mouse genome
2011
Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
2008
Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
2007
Accurate and Sensitive Peptide Identification with Mascot Percolator
2009