Citation Impact
Citing Papers
Evidence for a persistent microbial seed bank throughout the global ocean
2013
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
2013 Standout
Roary: rapid large-scale prokaryote pan genome analysis
2015 Standout
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
2014
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
2008
Respiratory Transformation of Nitrous Oxide (N2O) to Dinitrogen by Bacteria and Archaea
2006
pRMH760, a Precursor of A/C 2 Plasmids Carrying bla CMY and bla NDM Genes
2014
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave
2021 StandoutNatureNobel
Genome sequence-based species delimitation with confidence intervals and improved distance functions
2013 Standout
Rapid Detection of Genetic Engineering, Structural Variation, and Antimicrobial Resistance Markers in Bacterial Biothreat Pathogens by Nanopore Sequencing
2019
Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence
2019 StandoutNobel
Composition and function of cytochrome c biogenesis System II
2011
The diversity of conjugative relaxases and its application in plasmid classification
2009
pIP40a, a type 1 IncC plasmid from 1969 carries the integrative element GI sul2 and a novel class II mercury resistance transposon
2017
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
Compatibility and entry exclusion of IncA and IncC plasmids revisited: IncA and IncC plasmids are compatible
2018
An African origin for the intimate association between humans and Helicobacter pylori
2007 Nature
Analysis of antibiotic resistance regions in Gram-negative bacteria
2011
Spontaneous CRISPR loci generation in vivo by non-canonical spacer integration
2018
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
Phylogeny vs genome reshuffling: horizontal gene transfer
2008
pDGO100, a type 1 IncC plasmid from 1981 carrying ARI-A and a Tn 1696 -like transposon in a novel integrating element
2016
Ten years of pan-genome analyses
2014
The Human/Animal Interface: Emergence and Resurgence of Zoonotic Infectious Diseases
2007
Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis
2018 StandoutNobel
Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review
2017
A Functional Mini-Integrase in a Two-Protein Type V-C CRISPR System
2019 StandoutNobel
Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study
2020 Standout
Metagenomic biomarker discovery and explanation
2011 Standout
Dynamics of Genome Rearrangement in Bacterial Populations
2008
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer pathway to cytochrome c nitrous oxide reductase
2004
Microbial nitrate respiration – Genes, enzymes and environmental distribution
2011
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
2007
Genomic islands in pathogenic and environmental microorganisms
2004
Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
2015 Standout
Understanding the mechanisms and drivers of antimicrobial resistance
2015 Standout
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
The A to Z of A/C plasmids
2015
The primary transcriptome of the major human pathogen Helicobacter pylori
2010 StandoutNature
ABySS: A parallel assembler for short read sequence data
2009 Standout
Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review
2013 Standout
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
2012
Next-generation DNA sequencing
2008 Standout
Antibiotic resistance in the environment
2021 Standout
A framework for variation discovery and genotyping using next-generation DNA sequencing data
2011 Standout
Gain and Loss of Multiple Genes During the Evolution of Helicobacter pylori
2005
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
Tackling antibiotic resistance: the environmental framework
2015 Standout
Implant infections: adhesion, biofilm formation and immune evasion
2018 Standout
PCR-based typing of IncC plasmids
2016
Whole-genome prokaryotic phylogeny
2004
Comparative genomics and phylogeny of the IncI1 plasmids: A common plasmid type among porcine enterotoxigenic Escherichia coli
2011
Urinary tract infections: epidemiology, mechanisms of infection and treatment options
2015 Standout
Aquaculture as yet another environmental gateway to the development and globalisation of antimicrobial resistance
2016
A 20-year retrospective review of global aquaculture
2021 StandoutNature
Combinatorial events of insertion sequences and ICE in Gram-negative bacteria
2011
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
2008 Standout
Computational challenges in the analysis of ancient DNA
2010 StandoutNobel
Unraveling the regulatory network of IncA/C plasmid mobilization: When genomic islands hijack conjugative elements
2015
De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
2008
Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands
2005
The microbial nitrogen-cycling network
2018 Standout
Sequencing technologies — the next generation
2009 Standout
Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
2011
The human microbiome: at the interface of health and disease
2012 Standout
MEGAN analysis of metagenomic data
2007 Standout
Physiological Implications of Hydrogen Sulfide: A Whiff Exploration That Blossomed
2012 Standout
Mobile Genetic Elements Associated with Antimicrobial Resistance
2018 Standout
Evolution of the IS CR3 Group of IS CR Elements
2008
Identification of IncA/C Plasmid Replication and Maintenance Genes and Development of a Plasmid Multilocus Sequence Typing Scheme
2016
Copper Active Sites in Biology
2014 Standout
Evolution of IncA/C bla CMY-2 -Carrying Plasmids by Acquisition of the bla NDM-1 Carbapenemase Gene
2011
Succession of microbial consortia in the developing infant gut microbiome
2010 Standout
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Antimicrobial use in aquaculture re‐examined: its relevance to antimicrobial resistance and to animal and human health
2013
Genetic Dissection of the Francisella novicida Restriction Barrier
2008
Chaperone-Usher Fimbriae of <em>Escherichia coli</em>
2016
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Pathogenesis ofHelicobacter pyloriInfection
2006 Standout
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
2012 Standout
Food Animals and Antimicrobials: Impacts on Human Health
2011 Standout
Metabolic Interdependence of Obligate Intracellular Bacteria and Their Insect Hosts
2004
Enzymatic and Genetic Characterization of Carbon and Energy Metabolisms by Deep-Sea Hydrothermal Chemolithoautotrophic Isolates ofEpsilonproteobacteria
2005
Outbreak analytics: a developing data science for informing the response to emerging pathogens
2019
Meat consumption, health, and the environment
2018 StandoutScience
The US National Antimicrobial Resistance Monitoring System
2007
The Mononuclear Molybdenum Enzymes
2014 Standout
Genome update: prediction of secreted proteins in 225 bacterial proteomes
2005
The Long-Term Stability of the Human Gut Microbiota
2013 StandoutScience
A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane
2013 Standout
Bacteroides: the Good, the Bad, and the Nitty-Gritty
2007 Standout
Antimicrobial Resistance: Challenges and Perspectives
2013
Distinguishing features of δ-proteobacterial genomes
2006
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
2014 Standout
Works of Mark Eppinger being referenced
Genomic anatomy of Escherichia coli O157:H7 outbreaks
2011
A Predator Unmasked: Life Cycle of Bdellovibrio bacteriovorus from a Genomic Perspective
2004 Science
The Complete Genome Sequence of Yersinia pseudotuberculosis IP31758, the Causative Agent of Far East Scarlet-Like Fever
2007
Who Ate Whom? Adaptive Helicobacter Genomic Changes That Accompanied a Host Jump from Early Humans to Large Felines
2006
Multiple Antimicrobial Resistance in Plague: An Emerging Public Health Risk
2007
Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks
2016
Comparative analysis of four Campylobacterales
2004
Complete genome sequence and analysis of Wolinella succinogenes
2003
Genome Sequence of Y. pseudotuberculosis IP31758, the Causative Agent of Far East Scarlet Like Fever: Linking Genomic Plasticity to Pathogenicity
2005
Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines
2005
Genome Sequence of the Deep-Rooted Yersinia pestis Strain Angola Reveals New Insights into the Evolution and Pangenome of the Plague Bacterium
2010
Public Health Investigation of Two Outbreaks of Shiga Toxin-Producing Escherichia coli O157 Associated with Consumption of Watercress
2015