Standout Papers

NCBI prokaryotic genome annotat... 1996 2026 2006 2016 4.4k
  1. NCBI prokaryotic genome annotation pipeline (2016)
    Tatiana Tatusova, Michael DiCuccio et al. Nucleic Acids Research
  2. cag , a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors (1996)
    Stefano Censini, Z Xiang et al. Proceedings of the National Academy of Sciences
  3. Ab initio gene identification in metagenomic sequences (2010)
    Wenhan Zhu, Alexandre Lomsadze et al. Nucleic Acids Research
  4. BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database (2021)
    Tomáš Brůna, Katharina J. Hoff et al. NAR Genomics and Bioinformatics
  5. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses (2005)
    J Besemer, Mark Borodovsky Nucleic Acids Research
  6. BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS (2015)
    Katharina J. Hoff, Simone Lange et al. Bioinformatics
  7. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training (2008)
    Alexandre Lomsadze, Yury O. Chernoff et al. Genome Research
  8. Whole-Genome Annotation with BRAKER (2019)
    Katharina J. Hoff, Alexandre Lomsadze et al. Methods in molecular biology
  9. GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins (2020)
    Tomáš Brůna, Alexandre Lomsadze et al. NAR Genomics and Bioinformatics
  10. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA (2024)
    Lars Gabriel, Tomáš Brůna et al. Genome Research

Immediate Impact

16 by Nobel laureates 27 from Science/Nature 62 standout
Sub-graph 1 of 19

Citing Papers

Ancient gene linkages support ctenophores as sister to other animals
2023 StandoutNature
Uncovering the functional diversity of rare CRISPR-Cas systems with deep terascale clustering
2023 StandoutScience
4 intermediate papers

Works of Mark Borodovsky being referenced

GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
2020 Standout
Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes
2018
and 4 more

Author Peers

Author Last Decade Papers Cites
Mark Borodovsky 9259 3656 3545 88 15.6k
Ashlee M. Earl 10229 2646 3100 108 17.3k
Sofia K. Forslund 16424 3895 3393 95 24.8k
Shifu Chen 7616 3654 2585 111 15.9k
Jim F. Huggett 11009 2104 2016 106 20.4k
Yanqing Zhou 7436 3711 2492 73 14.9k
Morgan N. Price 11442 3213 5901 82 20.7k
Bruce W. Birren 10417 2943 2045 95 15.7k
Weizhong Li 12581 4404 3088 60 21.4k
Mihai Pop 21200 5869 3949 138 30.3k
Jia Gu 7203 3527 2491 31 14.5k

All Works

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2026