Standout Papers
- Bovine viral diarrhea virus NS3 serine proteinase: polyprotein cleavage sites, cofactor requirements, and molecular model of an enzyme essential for pestivirus replication (1997)
- Crystal Structure of the Hepatitis C Virus NS3 Protease Domain Complexed with a Synthetic NS4A Cofactor Peptide (1996)
- The Properties of Known Drugs. 1. Molecular Frameworks (1996)
Citation Impact
Citing Papers
The Hepatitis C Virus NS3 Protein: A Model RNA Helicase and Potential Drug Target
2007
High-Resolution Crystal Structure of an Engineered Human β 2 -Adrenergic G Protein–Coupled Receptor
2007 StandoutScienceNobel
Complete Replication of Hepatitis C Virus in Cell Culture
2005 StandoutScienceNobel
Directed evolution of cytochrome c for carbon–silicon bond formation: Bringing silicon to life
2016 StandoutScienceNobel
The hepatitis C virus NS3 protein: a model RNA helicase and potential drug target.
2007
Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism
2009 StandoutNobel
The Metal Binding Site of the Hepatitis C Virus NS3 Protease
1998
Challenges and successes in developing new therapies for hepatitis C
2005 Nature
SEC14L2 enables pan-genotype HCV replication in cell culture
2015 StandoutNatureNobel
ATP Binding Modulates the Nucleic Acid Affinity of Hepatitis C Virus Helicase
2003
A conformational switch controls hepatitis delta virus ribozyme catalysis
2004 StandoutNatureNobel
The Nonstructural Protein 3 Protease/Helicase Requires an Intact Protease Domain to Unwind Duplex RNA Efficiently
2004
Fragment-based lead discovery
2004
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool
1997
MicroRNAs
2004 Standout
Understanding organofluorine chemistry. An introduction to the C–F bond
2007 Standout
A Combinatorial Approach Defines Specificities of Members of the Caspase Family and Granzyme B
1997 Standout
Mechanism of autoproteolysis at the NS2–NS3 junction of the hepatitis C virus polyprotein
1998
Modular click chemistry libraries for functional screens using a diazotizing reagent
2019 StandoutNatureNobel
Mapping the surface of Escherichia coli peptide deformylase by NMR with organic solvents
2002
RecA-like motor ATPases—lessons from structures
2004
Unravelling hepatitis C virus replication from genome to function
2005 StandoutNatureNobel
UvrD Helicase Unwinds DNA One Base Pair at a Time by a Two-Part Power Stroke
2006
Casper Is a FADD- and Caspase-Related Inducer of Apoptosis
1997
Structural Basis for the Inhibition of Caspase-3 by XIAP
2001
ICE-LAP3, a Novel Mammalian Homologue of the Caenorhabditis elegans Cell Death Protein Ced-3 Is Activated during Fas- and Tumor Necrosis Factor-induced Apoptosis
1996
Caspase-8 specificity probed at subsite S 4 :crystal structure of the caspase-8-Z-DEVD-cho complex 1 1Edited by R. Huber
2000
Two Novel Conserved Motifs in the Hepatitis C Virus NS3 Protein Critical for Helicase Action
2003
Exploring privileged structures: the combinatorial synthesis of cyclic peptides
2002
Role of HIF-1α in hypoxia-mediated apoptosis, cell proliferation and tumour angiogenesis
1998 StandoutNatureNobel
RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP
2006 Nature
A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase
2005
Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase
2004 Nature
Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease–helicase
1999
Asymmetry in the Assembly of the RNAi Enzyme Complex
2003 Standout
A three-dimensional view of the molecular machinery of RNA interference
2008 StandoutNatureNobel
The impact of informatics and computational chemistry on synthesis and screening
2001
Protease Activity of in Vitro Transcribed and Translated Caenorhabditis elegans Cell Death Gene (ced-3) Product
1996
Structure of Recombinant Human CPP32 in Complex with the Tetrapeptide Acetyl-Asp-Val-Ala-Asp Fluoromethyl Ketone
1997
ICE-LAP6, a Novel Member of the ICE/Ced-3 Gene Family, Is Activated by the Cytotoxic T Cell Protease Granzyme B
1996
Treatment with Indinavir, Zidovudine, and Lamivudine in Adults with Human Immunodeficiency Virus Infection and Prior Antiretroviral Therapy
1997 Standout
The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding
2002
The biochemistry of apoptosis
2000 StandoutNature
Structural and Biological Identification of Residues on the Surface of NS3 Helicase Required for Optimal Replication of the Hepatitis C Virus
2005
In Vitro Characterization of a Purified NS2/3 Protease Variant of Hepatitis C Virus
2001
Inhibition of Human Caspases by Peptide-based and Macromolecular Inhibitors
1998
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Bayesian statistical analysis of protein side‐chain rotamer preferences
1997
The growing impact of click chemistry on drug discovery
2003 StandoutNobel
The Caenorhabditis elegans cell-death protein CED-3 is a cysteine protease with substrate specificities similar to those of the human CPP32 protease.
1996 StandoutNobel
Chemical remodelling of cell surfaces in living animals
2004 StandoutNatureNobel
Determination of Caspase Specificities Using a Peptide Combinatorial Library
2000
Identification and Characterization of CPP32/Mch2 Homolog 1, a Novel Cysteine Protease Similar to CPP32
1996
Binding of Different Divalent Cations to the Active Site of Avian Sarcoma Virus Integrase and Their Effects on Enzymatic Activity
1997
Insights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein
2008
NMR structure of the N-terminal domain of E. coli DnaB helicase: implications for structure rearrangements in the helicase hexamer
1999
Clue to damage recognition by UvrB: residues in the beta-hairpin structure prevent binding to non-damaged DNA
2001
Chemistry challenges in lead optimization: silicon isosteres in drug discovery
2003
Checkpoints of dueling dimers foil death wishes
1994
In vivo emergence of HIV-1 variants resistant to multiple protease inhibitors
1995 Nature
Identification and inhibition of the ICE/CED-3 protease necessary for mammalian apoptosis
1995 StandoutNature
Computational redesign of endonuclease DNA binding and cleavage specificity
2006 StandoutNatureNobel
Proteases to die for
1998
Caenorhabditis elegans CED-9 protein is a bifunctional cell-death inhibitor
1997 StandoutNatureNobel
RNA helicases — one fold for many functions
2007
Yama/CPP32β, a mammalian homolog of CED-3, is a CrmA-inhibitable protease that cleaves the death substrate poly(ADP-ribose) polymerase
1995 Standout
FLICE, A Novel FADD-Homologous ICE/CED-3–like Protease, Is Recruited to the CD95 (Fas/APO-1) Death-Inducing Signaling Complex
1996 Standout
Caspases: killer proteases
1997 Standout
ICE/CED3-like Proteases as Therapeutic Targets for the Control of Inappropriate Apoptosis
1996
The structures of caspases-1, -3, -7 and -8 reveal the basis for substrate and inhibitor selectivity
2000
The atomic-resolution structure of human caspase-8, a key activator of apoptosis
1999
Activation of the Native 45-kDa Precursor Form of Interleukin-1-converting Enzyme
1996
Structural biology of hepatitis C virus
2004
Revealing the world of RNA interference
2004 StandoutNatureNobel
Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase
2005 StandoutNatureNobel
A synthetic molecular pentafoil knot
2011
Protein‐based virtual screening of chemical databases. II. Are homology models of g‐protein coupled receptors suitable targets?
2002
The three-dimensional structure of apopain/CPP32, a key mediator of apoptosis
1996
Fas-associated Death Domain Protein Interleukin-1β-converting Enzyme 2 (FLICE2), an ICE/Ced-3 Homologue, Is Proximally Involved in CD95- and p55-mediated Death Signaling
1997
Mice deficient in IL-1β-converting enzyme are defective in production of mature IL-1β and resistant to endotoxic shock
1995
A surprising simplicity to protein folding
2000 StandoutNatureNobel
The role of the bcl-2/ced-9 gene family in cancer and general implications of defects in cell death control for tumourigenesis and resistance to chemotherapy
1997
Viral and cellular RNA helicases as antiviral targets
2005
CasX enzymes comprise a distinct family of RNA-guided genome editors
2019 StandoutNatureNobel
Inhibition of death receptor signals by cellular FLIP
1997 StandoutNature
Caspase Activation Involves the Formation of the Aposome, a Large (∼700 kDa) Caspase-activating Complex
1999
Novel Insights into Hepatitis C Virus Replication and Persistence
2004
The three-dimensional structure of caspase-8: an initiator enzyme in apoptosis
1999
Caspases: key mediators of apoptosis
1998
Crystal Structure of a Procaspase-7 Zymogen
2001
Suicidal Tendencies: Apoptotic Cell Death by Caspase Family Proteinases
1999
Identification and Characterization of ICH-2, a Novel Member of the Interleukin-1β-converting Enzyme Family of Cysteine Proteases
1995
Crystal Structures of Complexes of PcrA DNA Helicase with a DNA Substrate Indicate an Inchworm Mechanism
1999
A combinatorial approach for determining protease specificities: application to interleukin-1β converting enzyme (ICE)
1997
CPP32/Apopain Is a Key Interleukin 1β Converting Enzyme-like Protease Involved in Fas-mediated Apoptosis
1996
Involvement of an ICE-like protease in Fas-mediated apoptosis
1995 Nature
Molecular Cloning and Pro-apoptotic Activity of ICErelII and ICErelIII, Members of the ICE/CED-3 Family of Cysteine Proteases
1995
Inhibition of the Caenorhabditis elegans cell-death protease CED-3 by a CED-3 cleavage site in baculovirus p35 protein
1995 StandoutNatureNobel
Replication of hepatitis C virus
2007 StandoutNobel
Fas- and Tumor Necrosis Factor-induced Apoptosis Is Inhibited by the Poxvirus crmA Gene Product
1995
Use of Locally Enhanced Sampling in Free Energy Calculations: Testing and Application to the α → β Anomerization of Glucose
1998
Natural Product-like Combinatorial Libraries Based on Privileged Structures. 1. General Principles and Solid-Phase Synthesis of Benzopyrans
2000
Altered Cytokine Export and Apoptosis in Mice Deficient in Interleukin-1β Converting Enzyme
1995 Science
Molecular Recognition of Protein−Ligand Complexes: Applications to Drug Design
1997 Standout
Conformational Complexity of Succinic Acid and Its Monoanion in the Gas Phase and in Solution: Ab Initio Calculations and Monte Carlo Simulations
1998
Structural and Solvent Effects on the Mechanism of the Thermal Decarboxylation of 2-Oxetanones. A Limiting Case between Concerted and Stepwise Pathways in Pericyclic Reactions
1997
Factors controlling relative stability of anomers and hydroxymethyl conformers of glucopyranose
1998
Serpin Structure, Mechanism, and Function
2002 Standout
The in silico world of virtual libraries
2000
Molecular Properties That Influence the Oral Bioavailability of Drug Candidates
2002 Standout
Characterization and mutational analysis of the helicase and NTPase activities of hepatitis C virus full-length NS3 protein.
1999
Delft molecular mechanics: a new approach to hydrocarbon force fields. Inclusion of a geometry-dependent charge calculation
1994
Toward High-Resolution de Novo Structure Prediction for Small Proteins
2005 StandoutScienceNobel
Caspase-1 (interleukin-1β-converting enzyme) is inhibited by the human serpin analogue proteinase inhibitor 9
1999
Ab Initio computed molecular structures and energies of the conformers of glucose
1992
Is There a Difference between Leads and Drugs? A Historical Perspective
2001
Chemical Reactivity as Described by Quantum Chemical Methods
2002
Spring-Loaded Mechanism of DNA Unwinding by Hepatitis C Virus NS3 Helicase
2007 Science
Subcellular Localization, Stability, and trans -Cleavage Competence of the Hepatitis C Virus NS3-NS4A Complex Expressed in Tetracycline-Regulated Cell Lines
2000 StandoutNobel
Polarizable Continuum Model (PCM) Calculations of Solvent Effects on Optical Rotations of Chiral Molecules
2002
The atom, the molecule, and the covalent organic framework
2017 StandoutScienceNobel
Inhibition of ICE Family Proteases by Baculovirus Antiapoptotic Protein p35
1995 Science
Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics
1999 Standout
Conceptual Density Functional Theory
2003 Standout
Solvent Effects. 5. Influence of Cavity Shape, Truncation of Electrostatics, and Electron Correlation on ab Initio Reaction Field Calculations
1996
The Canyon Hypothesis
1989
Solid-phase synthesis of 4-aryl-1,4-dihydropyridines via the Hantzsch three component condensation
2000
Structure and Mechanism of Helicases and Nucleic Acid Translocases
2007
Efficient Initiation of HCV RNA Replication in Cell Culture
2000 StandoutScienceNobel
XSOL, a Combined Integral Equation (XRISM) and Quantum Mechanical Solvation Model: Free Energies of Hydration and Applications to Solvent Effects on Organic Equilibria
1998
Structural determinants for membrane association and dynamic organization of the hepatitis C virus NS3-4A complex
2008
RECAPRetrosynthetic Combinatorial Analysis Procedure: A Powerful New Technique for Identifying Privileged Molecular Fragments with Useful Applications in Combinatorial Chemistry
1998
Ab Initio Study of the Axial/Equatorial Equilibrium in N- and O-Containing Rings in Gas Phase and Aqueous Solution: 1-Oxa-3-aza-, 1-Oxa-3,5-diaza-, 1,3-Dioxa-5-azacyclohexanes and N-Methyl Derivatives
1997
Structural basis for the activation of human procaspase-7
2001 Nobel
Theoretical study of the basicity of alkyl amines in vacuo and in different solvents: a density functional theory approach
1999
Ab initiocalculation of molar volumes: Comparison with experiment and use in solvation models
1995
Dimer formation drives the activation of the cell death protease caspase 9
2001
A novel human protease similar to the interleukin-1 beta converting enzyme induces apoptosis in transfected cells.
1995
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
2003 StandoutScienceNobel
Fas Preassociation Required for Apoptosis Signaling and Dominant Inhibition by Pathogenic Mutations
2000 StandoutScienceNobel
ADME/PK as part of a rational approach to drug discovery
2000
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
Ab Initio Study of the Solvent Effects on the Singlet−Triplet Gap of Nitrenium Ions and Carbenes
1998
Price-Focused Analysis of Commercially Available Building Blocks for Combinatorial Library Synthesis
2015
Conformationally-Dependent Free Energies of Solvation. An Explanation for the Large Group-Transfer Potential of Acetylcarnitine
1997
The Combinatorial Synthesis of Bicyclic Privileged Structures or Privileged Substructures
2003 Standout
Structural Mechanism for STI-571 Inhibition of Abelson Tyrosine Kinase
2000 StandoutScience
Mammalian Caspases: Structure, Activation, Substrates, and Functions During Apoptosis
1999 Standout
Mutations in Hepatitis C Virus RNAs Conferring Cell Culture Adaptation
2001
A point mutation abolishes the helicase but not the nucleoside triphosphatase activity of hepatitis C virus NS3 protein
1997
Hepatitis C Virus-Encoded Enzymatic Activities and Conserved RNA Elements in the 3′ Nontranslated Region Are Essential for Virus Replication In Vivo
2000 StandoutNobel
A Common Mechanism Underlying Promiscuous Inhibitors from Virtual and High-Throughput Screening
2002
Solid-Phase Synthesis of Libraries Generated from a 4-Phenyl-2-carboxy-piperazine Scaffold
2001
CPP32, a novel human apoptotic protein with homology to Caenorhabditis elegans cell death protein Ced-3 and mammalian interleukin-1 beta-converting enzyme.
1994
Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin
2011 StandoutScienceNobel
A Theoretical Examination of the Factors Controlling the Catalytic Efficiency of a Transmethylation Enzyme: Catechol O-Methyltransferase
1997
Theoretical Investigation of the Hydride Transfer from Formate to NAD+ and the Implications for the Catalytic Mechanism of Formate Dehydrogenase
1998
Is hyperconjugation responsible for the “gauche effect” in 1-fluoropropane and other 2-substituted-1-fluoroethanes? †
1999
Exo-anomeric effects on energies and geometries of different conformations of glucose and related systems in the gas phase and aqueous solution
1997
Discovering High-Affinity Ligands for Proteins: SAR by NMR
1996 StandoutScience
Anisotropy of the Induced Current Density (ACID), a General Method To Quantify and Visualize Electronic Delocalization
2005 Standout
Calculation of Relative Binding Free Energies of Peptidic Inhibitors to HIV-1 Protease and Its I84V Mutant
1998
Quantum Chemical Study of the Thermodynamic and Kinetic Aspects of the SN2 Reaction in Gas Phase and Solution Using a DFT Interpretation
2001
Simulation of enzyme reactions using valence bond force fields and other hybrid quantum/classical approaches
1993 StandoutNobel
Quantum Mechanical Continuum Solvation Models
2005 Standout
Specific cleavage of the 70-kDa protein component of the U1 small nuclear ribonucleoprotein is a characteristic biochemical feature of apoptotic cell death.
1994
Protein-Protein Interactions between Hepatitis C Virus Nonstructural Proteins
2003
NS3 Helicase Domains Involved in Infectious Intracellular Hepatitis C Virus Particle Assembly
2008
Privileged Molecules for Protein Binding Identified from NMR-Based Screening
2000
Structural Basis for Double-Stranded RNA Processing by Dicer
2006 StandoutScienceNobel
Cavity size in reaction field theory
1998
Theoretical Study of the Solvent Effect on Functional Group Properties and on the Charge Distribution and Acidity of Alkyl-Substituted Alcohols
1998
Uncleaved NS2-3 Is Required for Production of Infectious Bovine Viral Diarrhea Virus
2004 StandoutNobel
Modulation of Hepatitis C Virus NS5A Hyperphosphorylation by Nonstructural Proteins NS3, NS4A, and NS4B
1999
Caspases: Enemies Within
1998 StandoutScience
Viral and Cellular Determinants of Hepatitis C Virus RNA Replication in Cell Culture
2003
Interleukin-1 beta converting enzyme requires oligomerization for activity of processed forms in vivo.
1995
Structure-Based Mutational Analysis of the Hepatitis C Virus NS3 Helicase
2001
Roles of caspases in apoptosis, development, and cytokine maturation revealed by homozygous gene deficiencies
2000
Role of geometrical relaxation in solution of simple molecules exhibiting anomeric effects
1996
Solvent Effects in Chloroform Solution: Parametrization of the MST/SCRF Continuum Model
1996
Structure of the catalytic domain of the hepatitis C virus NS2-3 protease
2006 StandoutNatureNobel
Works of Mark A. Murcko being referenced
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding
1998
Thienothiopyran-2-sulfonamides: novel topically active carbonic anhydrase inhibitors for the treatment of glaucoma
1989
The structural basis for the specificity of pyridinylimidazole inhibitors of p38 MAP kinase
1997
Structure and mechanism of interleukin-lβ converting enzyme
1994 Nature
Recognizing molecules with drug-like properties
1999
Calculation of solvation and binding free energy differences between VX-478 and its analogs by free energy perturbation and AMSOL methods
1996
Chemogenomic approaches to drug discovery
2001
The SHAPES strategy: an NMR-based approach for lead generation in drug discovery
1999
Crystal Structure of the Hepatitis C Virus NS3 Protease Domain Complexed with a Synthetic NS4A Cofactor Peptide
1996 StandoutNobel
Design, synthesis and structure of non-macrocyclic inhibitors of FKBP12, the major binding protein for the immunosuppressant FK506
1995
GroupBuild: a fragment-based method for de novo drug design
1993
Inhibition of carbonic anhydrase
1991
What Do Medicinal Chemists Actually Make? A 50-Year Retrospective
2011
Virtual screening—an overview
1998
Rotational barriers. 2. Energies of alkane rotamers. An examination of gauche interactions
1988
Evidence for the direct involvement of the rhinovirus canyon in receptor binding.
1988
Origin of the Gauche Effect in substituted ethanes and ethenes
1990
The synthesis and evaluation of peptidyl aspartyl aldehydes as inhibitors of ice.
1994
Designing Libraries with CNS Activity
1999
Can We Learn To Distinguish between “Drug-like” and “Nondrug-like” Molecules?
1998
Consensus Scoring: A Method for Obtaining Improved Hit Rates from Docking Databases of Three-Dimensional Structures into Proteins
1999
Solvent Effects on 1,2-Dihaloethane Gauche/Trans Ratios
1995
Properties of Known Drugs. 2. Side Chains
1999
Rotational barriers. 4. Dimethoxymethane. The anomeric effect revisited
1989
Charged surface residues of FKBP12 participate in formation of the FKBP12-FK506-calcineurin complex.
1992
The Properties of Known Drugs. 1. Molecular Frameworks
1996 Standout
Rotational barriers. 1. 1,2-Dihaloethanes
1987
Crystal structure of HIV-1 protease in complex with VX-478, a potent and orally bioavailable inhibitor of the enzyme
1995
Structure-based design of non-peptidic pyridone aldehydes as inhibitors of interleukin-1β converting enzyme
1997
Ab initio molecular orbital conformational analysis of prototypical organic systems. 1. Ethylene glycol and 1,2-dimethoxyethane
1992
Bovine viral diarrhea virus NS3 serine proteinase: polyprotein cleavage sites, cofactor requirements, and molecular model of an enzyme essential for pestivirus replication
1997 StandoutNobel