Standout Papers
Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Prokka: rapid prokaryotic genome annotation
2014 Standout
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
GPCR Engineering Yields High-Resolution Structural Insights into β 2 -Adrenergic Receptor Function
2007 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Direct observation of the dynamics of single metal ions at the interface with solids in aqueous solutions
2017
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Design of symmetric TIM barrel proteins from first principles
2015
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
GROMACS: Fast, flexible, and free
2005 Standout
Atomic packing and short-to-medium-range order in metallic glasses
2006 StandoutNature
The Pfam Protein Families Database
2002 Standout
BLAST+: architecture and applications
2009 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Computational and analytical framework for small RNA profiling by high-throughput sequencing
2009
Complete nitrification by a single microorganism
2015 Nature
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Database resources of the National Center for Biotechnology Information: update
2003 Standout
Evolution of a designed protein assembly encapsulating its own RNA genome
2017 StandoutNatureNobel
Two Different Models to Predict Ionic‐Liquid Diffraction Patterns: Fixed‐Charge versus Polarizable Potentials
2014
Membrane protein sequestering by ionic protein–lipid interactions
2011 StandoutNatureNobel
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
Functional interactions between the gut microbiota and host metabolism
2012 StandoutNature
The structure and function of G-protein-coupled receptors
2009 StandoutNatureNobel
Diet rapidly and reproducibly alters the human gut microbiome
2013 StandoutNature
High prevalence of Streptococcus pyogenes Cas9-reactive T cells within the adult human population
2018
Scalable molecular dynamics with NAMD
2005 Standout
Polarizable Force Fields
2012
Phase Transitions in Biological Systems with Many Components
2017
Polarizable Water Model for the Coarse-Grained MARTINI Force Field
2010
GenBank
2012 Standout
Structural differences between thermophilic and mesophilic membrane proteins
2012
UPARSE: highly accurate OTU sequences from microbial amplicon reads
2013 Standout
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
New tools provide a second look at HDV ribozyme structure, dynamics and cleavage
2014 StandoutNobel
GPCRdb: an information system for G protein-coupled receptors
2015
An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling
2011
Pushing the frontiers of density functionals by solving the fractional electron problem
2021 StandoutScienceNobel
Water Modeled As an Intermediate Element between Carbon and Silicon
2008
Coarse-graining entropy, forces, and structures
2011
Structure and Nanostructure in Ionic Liquids
2015 Standout
Thermodynamically Consistent Force Fields for the Assembly of Inorganic, Organic, and Biological Nanostructures: The INTERFACE Force Field
2012
Computer Simulation of Liquids
2017 Standout
Multiscale Simulation of Soft Matter: From Scale Bridging to Adaptive Resolution
2007
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
2010
Water as an Active Constituent in Cell Biology
2007 Standout
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
2007 Standout
Ultrafast solvation dynamics at binding and active sites of photolyases
2010 StandoutNobel
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
The multiscale coarse-graining method. VI. Implementation of three-body coarse-grained potentials
2010
Sequence–Structure–Binding Relationships Reveal Adhesion Behavior of the Car9 Solid-Binding Peptide: An Integrated Experimental and Simulation Study
2020 StandoutNobel
Structural Examination of the Impact of Glycerol on Water Structure
2011
Tinker 8: Software Tools for Molecular Design
2018
Ion-dependent protein–surface interactions from intrinsic solvent response
2021 StandoutNobel
The Properties of Water: Insights from Quantum Simulations
2009
Versatile Object-Oriented Toolkit for Coarse-Graining Applications
2009
Aquatic animal telemetry: A panoramic window into the underwater world
2015 StandoutScience
Force Field Benchmark of Organic Liquids: Density, Enthalpy of Vaporization, Heat Capacities, Surface Tension, Isothermal Compressibility, Volumetric Expansion Coefficient, and Dielectric Constant
2011
Solvent dramatically affects protein structure refinement
2008 StandoutNobel
Partial Genome Assembly for a Candidate Division OP11 Single Cell from an Anoxic Spring (Zodletone Spring, Oklahoma)
2011
Hydrogen-bond kinetics in liquid water
1996 StandoutNature
New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions
2018
Computational design of mechanically coupled axle-rotor protein assemblies
2022 StandoutScienceNobel
ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution
2019
Polarizable force fields for molecular dynamics simulations of biomolecules
2015
Canonical sampling through velocity rescaling
2007 Standout
Protein Hydration Dynamics and Molecular Mechanism of Coupled Water−Protein Fluctuations
2009
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
2015 Standout
Recent water myths
2010
Structure and dynamics of monohydroxy alcohols—Milestones towards their microscopic understanding, 100 years after Debye
2014
Quantum Mechanical Continuum Solvation Models
2005 Standout
Fast Parallel Algorithms for Short-Range Molecular Dynamics
1995 Standout
Hamiltonian Adaptive Resolution Simulation for Molecular Liquids
2013
How Accurate Is Density Functional Theory at Predicting Dipole Moments? An Assessment Using a New Database of 200 Benchmark Values
2018
A New Dimension for Coordination Polymers and Metal–Organic Frameworks: Towards Functional Glasses and Liquids
2019 StandoutNobel
Good Practices in Free-Energy Calculations
2010
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
2011 StandoutNobel
Interaction of a long alkyl chain protic ionic liquid and water
2014
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
2010 StandoutScienceNobel
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
A smooth particle mesh Ewald method
1995 Standout
Works of Margaret E. Johnson being referenced
Current Status of the AMOEBA Polarizable Force Field
2010
NCBI BLAST: a better web interface
2008 Standout
Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks
2010
Hydration Water Dynamics Near Biological Interfaces
2008
Representability problems for coarse-grained water potentials
2007
Tetrahedral structure or chains for liquid water
2006