Citation Impact
Citing Papers
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
2016
BBKNN: fast batch alignment of single cell transcriptomes
2019
A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis
2021 StandoutScienceNobel
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
2018 Science
A sex-biased imbalance between Tfr, Tph, and atypical B cells determines antibody responses in COVID-19 patients
2023 StandoutNobel
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo
2018 Science
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation
2016
Pan-cancer single-cell landscape of tumor-infiltrating T cells
2021 Science
VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
2020 StandoutNobel
Arid5a Promotes Immune Evasion by Augmenting Tryptophan Metabolism and Chemokine Expression
2021 StandoutNobel
DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
2019 Standout
SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data
2023
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program
2019
Resolving early mesoderm diversification through single-cell expression profiling
2016 Nature
Integrated analysis of glycan and RNA in single cells
2021
Efficient and precise single-cell reference atlas mapping with Symphony
2021
Defining the earliest step of cardiovascular lineage segregation by single-cell RNA-seq
2018 Science
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
2018
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Interpretable dimensionality reduction of single cell transcriptome data with deep generative models
2018
High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa
2020 Standout
Human Stem Cell Resources Are an Inroad to Neandertal DNA Functions
2020 StandoutNobel
Reading the glyco-code: New approaches to studying protein–carbohydrate interactions
2022 StandoutNobel
Head and neck squamous cell carcinoma
2020 Standout
SCANPY: large-scale single-cell gene expression data analysis
2018 Standout
The history and advances in cancer immunotherapy: understanding the characteristics of tumor-infiltrating immune cells and their therapeutic implications
2020 Standout
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
2019
Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
2017
Challenges and emerging directions in single-cell analysis
2017
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
Single-cell RNA-seq denoising using a deep count autoencoder
2019
Scaling single-cell genomics from phenomenology to mechanism
2017 Nature
Molecular Architecture of the Mouse Nervous System
2018 Standout
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Fast, sensitive and accurate integration of single-cell data with Harmony
2019 Standout
Chronic inflammation in the etiology of disease across the life span
2019 Standout
Approaches to treat immune hot, altered and cold tumours with combination immunotherapies
2019 Standout
Visualizing structure and transitions in high-dimensional biological data
2019
Hallmarks of aging: An expanding universe
2023 Standout
A single-cell molecular map of mouse gastrulation and early organogenesis
2019 Nature
Allergic inflammatory memory in human respiratory epithelial progenitor cells
2018 Nature
AI in health and medicine
2022 Standout
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
2018
Revealing the vectors of cellular identity with single-cell genomics
2016
SCENIC: single-cell regulatory network inference and clustering
2017 Standout
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
2019
The changing landscape of atherosclerosis
2021 StandoutNature
Diverse partial reprogramming strategies restore youthful gene expression and transiently suppress cell identity
2022
Exploiting single-cell expression to characterize co-expression replicability
2016
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
2018
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
2018
Dermal Condensate Niche Fate Specification Occurs Prior to Formation and Is Placode Progenitor Dependent
2018
A distinct innate immune signature marks progression from mild to severe COVID-19
2020
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
2019 Standout
High-performance medicine: the convergence of human and artificial intelligence
2018 Standout
Multimodal biomedical AI
2022 Standout
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
2020 Standout
Distinct Regulatory Programs Control the Latent Regenerative Potential of Dermal Fibroblasts during Wound Healing
2020
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer
2020
A comparison of single-cell trajectory inference methods
2019
Intrinsically disordered proteins in cellular signalling and regulation
2014 Standout
The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth
2023 Standout
CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
2020 Standout
Dictionary learning for integrative, multimodal and scalable single-cell analysis
2023 Standout
A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring
2019
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
2017 Standout
Normalizing single-cell RNA sequencing data: challenges and opportunities
2017
Dimensionality reduction for visualizing single-cell data using UMAP
2018 Standout
Adaptive plasticity of IL-10+ and IL-35+ Treg cells cooperatively promotes tumor T cell exhaustion
2019
Applications of machine learning in drug discovery and development
2019 Standout
Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars
2018
The binding mechanisms of intrinsically disordered proteins
2013
Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
2017 StandoutNobel
Exploring single-cell data with deep multitasking neural networks
2019
Defining trained immunity and its role in health and disease
2020 Standout
Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer
2020
Integrative single-cell analysis
2019
Down syndrome
2020 Standout
Comprehensive Integration of Single-Cell Data
2019 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
An Immune Atlas of Clear Cell Renal Cell Carcinoma
2017
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
2019
Tumor-infiltrating regulatory T cells as targets of cancer immunotherapy
2023 StandoutNobel
Computational approaches for interpreting scRNA ‐seq data
2017
Encyclopedia of Analytical Chemistry
2006 Standout
Reversed graph embedding resolves complex single-cell trajectories
2017 Standout
Manifold learning-based methods for analyzing single-cell RNA-sequencing data
2017
Single Cell RNA Sequencing in Atherosclerosis Research
2020
Physicochemical Properties of Cells and Their Effects on Intrinsically Disordered Proteins (IDPs)
2014
scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data
2018
Cell lineage and communication network inference via optimization for single-cell transcriptomics
2019
The Human Cell Atlas
2017
Molecular transitions in early progenitors during human cord blood hematopoiesis
2018
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Mature dendritic cells enriched in regulatory molecules may control regulatory T cells and the prognosis of head and neck cancer
2022 StandoutNobel
Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models
2021
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
pH-Jump Induced Leucine Zipper Folding beyond the Diffusion Limit
2014
A single-cell survey of the human first-trimester placenta and decidua
2018
Hyper-Progressive Disease: The Potential Role and Consequences of T-Regulatory Cells Foiling Anti-PD-1 Cancer Immunotherapy
2020 StandoutNobel
Works of Maren Büttner being referenced
destiny : diffusion maps for large-scale single-cell data in R
2015
Benchmarking atlas-level data integration in single-cell genomics
2021
Diffusion pseudotime robustly reconstructs lineage branching
2016
A test metric for assessing single-cell RNA-seq batch correction
2018
Mapping single-cell data to reference atlases by transfer learning
2021
Testing the diffusing boundary model for the helix–coil transition in peptides
2013
Transition state and ground state properties of the helix–coil transition in peptides deduced from high-pressure studies
2013