Citation Impact
Citing Papers
Nextstrain: real-time tracking of pathogen evolution
2018 Standout
Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing
2012
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus
2012
Immunity Against Heterosubtypic Influenza Virus Induced By Adenovirus And MVA Expressing Nucleoprotein And Matrix Protein-1
2013
Risk Factors for SARS Transmission from Patients Requiring Intubation: A Multicentre Investigation in Toronto, Canada
2010
The application of genomics to tracing bacterial pathogen transmission
2014
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
2012
Supersize me: how whole-genome sequencing and big data are transforming epidemiology
2014
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
2014 Standout
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
2013
Spatial and temporal analyses to investigate infectious disease transmission within healthcare settings
2014
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
Enhancing the triage and cohort of patients in public primary care clinics in response to the coronavirus disease 2019 (COVID-19) in Hong Kong: an experience from a hospital cluster
2020
Identification of acquired antimicrobial resistance genes
2012 Standout
Hypervirulent (hypermucoviscous)Klebsiella pneumoniae
2013 Standout
Tuberculosis
2015
HIV and depression: 2008 review and update
2008
COVID-19 and the 5G Conspiracy Theory: Social Network Analysis of Twitter Data
2020 Standout
The expanding scope of DNA sequencing
2012
Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria
2014 Standout
Attribution of Foodborne Illnesses, Hospitalizations, and Deaths to Food Commodities by using Outbreak Data, United States, 1998–2008
2013 Standout
Mycobacterium tuberculosis – Heterogeneity revealed through whole genome sequencing
2012
Tracking a hospital outbreak of KPC-producing ST11 Klebsiella pneumoniae with whole genome sequencing
2015
Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review
2017
Future challenges to microbial food safety
2009
Whole Genome Sequencing and Spatial Analysis Identifies Recent Tuberculosis Transmission Hotspots in Ghana
2020
A Multi-Targeting, Nucleoside-Modified mRNA Influenza Virus Vaccine Provides Broad Protection in Mice
2020 StandoutNobel
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
The complex microbiota of raw milk
2013 Standout
The deadly coronaviruses: The 2003 SARS pandemic and the 2020 novel coronavirus epidemic in China
2020 Standout
Aerosol Generating Procedures and Risk of Transmission of Acute Respiratory Infections to Healthcare Workers: A Systematic Review
2012 Standout
Protecting healthcare workers from pandemic influenza: N95 or surgical masks?
2010
Clinical management and infection control of SARS: Lessons learned
2013
Understanding the mechanisms and drivers of antimicrobial resistance
2015 Standout
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
Bacterial epidemiology and biology - lessons from genome sequencing
2011
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
2012
A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study
2017 Standout
Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses
2016 Standout
School closure and management practices during coronavirus outbreaks including COVID-19: a rapid systematic review
2020 Standout
Implant infections: adhesion, biofilm formation and immune evasion
2018 Standout
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
2013 Standout
Severe Acute Respiratory Syndrome (SARS)
2010
Recurrent multistate outbreak of Salmonella Newport associated with tomatoes from contaminated fields, 2005
2007
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
epic3: National Evidence-Based Guidelines for Preventing Healthcare-Associated Infections in NHS Hospitals in England
2013 Standout
The “Vertigo” of the Food Sector within the Triangle of Climate Change, the Post-Pandemic World, and the Russian-Ukrainian War
2023 Standout
Nonpharmaceutical Measures for Pandemic Influenza in Nonhealthcare Settings—Social Distancing Measures
2020
Distance learning during the COVID-19 pandemic: School closure in Indonesia
2021 Standout
Sustainable Smart Cities: Convergence of Artificial Intelligence and Blockchain
2021 Standout
Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak
2011
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
2018 Standout
Tweeting Grenfell: Discourse and networks in critical constructions of British Muslim social boundaries on social media
2019
#MacronLeaks as a “warning shot” for European democracies: challenges to election blackouts presented by social media and election meddling during the 2017 French presidential election
2019
Antibiotic Use in Agriculture and Its Consequential Resistance in Environmental Sources: Potential Public Health Implications
2018 Standout
Pathogen Genomics in Public Health
2019
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
2014 Standout
Toward a Literature-Driven Definition of Big Data in Healthcare
2015 Standout
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
2012 Standout
Nonthermal Plasma Inactivation of Food-Borne Pathogens
2011 Standout
Clinical chorioamnionitis at term I: microbiology of the amniotic cavity using cultivation and molecular techniques
2015
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
2016 Standout
State of the art review of Big Data and web-based Decision Support Systems (DSS) for food safety risk assessment with respect to climate change
2021
Antibiotics and Antibiotic Resistance in Agroecosystems: State of the Science
2016
State of the art of nursing education and the challenges to use remote technologies in the time of Corona Virus Pandemic
2020 Standout
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
Atenção primária à saúde em tempos de COVID-19: o que fazer?
2020 Standout
Bacterial genomes in epidemiology—present and future
2013
Characteristics of Ocular Findings of Patients With Coronavirus Disease 2019 (COVID-19) in Hubei Province, China
2020 Standout
A Novel Coronavirus from Patients with Pneumonia in China, 2019
2020 Standout
Stigma as a Fundamental Cause of Population Health Inequalities
2013 Standout
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
2018 Standout
IoT, Big Data, and Artificial Intelligence in Agriculture and Food Industry
2020 Standout
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
2014 Standout
Works of Marcus Lem being referenced
Seasonal Influenza Vaccine and Increased Risk of Pandemic A/H1N1‐Related Illness: First Detection of the Association in British Columbia, Canada
2010
Cluster of Cases of Severe Acute Respiratory Syndrome Among Toronto Healthcare Workers After Implementation of Infection Control Precautions: A Case Series
2006
A case of Mycoplasma hominis meningo-encephalitis in a full-term infant: rapid recovery after start of treatment with ciprofloxacin
2003
Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
2011
An outbreak due to peanuts in their shell caused by Salmonella enterica serotypes Stanley and Newport – sharing molecular information to solve international outbreaks
2004
Back to work: Correlates of employment among persons receiving highly active antiretroviral therapy
2005