Citation Impact
Citing Papers
Removing T-cell epitopes with computational protein design
2014 StandoutNobel
LeadMine: a grammar and dictionary driven approach to entity recognition
2015
The UK Biobank resource with deep phenotyping and genomic data
2018 StandoutNature
An Expanded View of Complex Traits: From Polygenic to Omnigenic
2017 Standout
The Gene Ontology Resource: 20 years and still GOing strong
2018 Standout
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
FireDB: a compendium of biological and pharmacologically relevant ligands
2013
Genetic effects on gene expression across human tissues
2017 StandoutNature
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
2015 Standout
Quantifying the impact of public omics data
2019
The Gene Ontology: enhancements for 2011
2011
Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
2014 Standout
SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents
2011
In Silico Target Prediction for Small Molecules
2018
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases
2015
Reactome pathway analysis to enrich biological discovery in proteomics data sets
2011
MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
2012
CEBS: a comprehensive annotated database of toxicological data
2016
ChEMBL: a large-scale bioactivity database for drug discovery
2011 Standout
Updates in Rhea – an expert curated resource of biochemical reactions
2016
The Immune Epitope Database 2.0
2009
DrugBank 4.0: shedding new light on drug metabolism
2013 Standout
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 Standout
RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes
2017 StandoutNobel
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
I-TASSER server: new development for protein structure and function predictions
2015 Standout
Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferences
2022 StandoutNobel
ClinVar: public archive of relationships among sequence variation and human phenotype
2013 Standout
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
2011
Database resources of the National Center for Biotechnology Information: update
2003 Standout
PomBase 2015: updates to the fission yeast database
2014
The human DEPhOsphorylation database DEPOD: a 2015 update
2014
The ChEMBL database as linked open data
2013
ConsensusPathDB—a database for integrating human functional interaction networks
2008
WikiPathways: building research communities on biological pathways
2011
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web
2011
SureChEMBL: a large-scale, chemically annotated patent document database
2015
PubChem Substance and Compound databases
2015 Standout
Reactome knowledgebase of human biological pathways and processes
2008
The European Bioinformatics Institute in 2016: Data growth and integration
2015
The Human Phenotype Ontology
2010
2016 update of the PRIDE database and its related tools
2015 Standout
miRBase: annotating high confidence microRNAs using deep sequencing data
2013 Standout
dictyBase—a Dictyostelium bioinformatics resource update
2008
Network-Based Approaches for Multi-omics Integration
2020
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
2013 Standout
Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals
2020 Standout
Uberon, an integrative multi-species anatomy ontology
2012
Modeling biomedical experimental processes with OBI
2010
PubChem chemical structure standardization
2018
Evolution of the Sequence Ontology terms and relationships
2010
SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules
2017 Standout
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
MetaboAnalyst 3.0—making metabolomics more meaningful
2015 Standout
Analysis Tool Web Services from the EMBL-EBI
2013
The Comparative Toxicogenomics Database: update 2013
2012
MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data
2010
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
2015
The immune epitope database (IEDB) 3.0
2014 Standout
The Cellosaurus, a Cell-Line Knowledge Resource
2018
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
2013 Standout
MetaboLights: a resource evolving in response to the needs of its scientific community
2019
Automatic identification of relevant chemical compounds from patents
2019
Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints
2018
opm: an R package for analysing OmniLog® phenotype microarray data
2013
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences
2019
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
miRDB: an online database for prediction of functional microRNA targets
2019 Standout
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics
2019
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
2013 Standout
A circadian gene expression atlas in mammals: Implications for biology and medicine
2014 Standout
MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions
2009
ProTox-II: a webserver for the prediction of toxicity of chemicals
2018 Standout
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
PubChem 2023 update
2022 Standout
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
PubChem 2019 update: improved access to chemical data
2018 Standout
SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual Screening
2016
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
2018 Standout
Bioanalysis of Eukaryotic Organelles
2013
The switches.ELM Resource: A Compendium of Conditional Regulatory Interaction Interfaces
2013
Superoxide Ion: Generation and Chemical Implications
2016 Standout
The Immune Epitope Database (IEDB): 2018 update
2018
Complex Portal 2022: new curation frontiers
2021
PubChem in 2021: new data content and improved web interfaces
2020 Standout
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes
2018
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Marcus Ennis being referenced
ChEBI: a chemistry ontology and database
2010
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
2012
ChEBI in 2016: Improved services and an expanding collection of metabolites
2015
ChEBI: a database and ontology for chemical entities of biological interest
2007
Structure-based classification and ontology in chemistry
2012
Rhea—a manually curated resource of biochemical reactions
2011
Chemical Entities of Biological Interest: an update
2009