Citation Impact
Citing Papers
The Genetic Basis for Bacterial Mercury Methylation
2013 StandoutScience
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
2010 Standout
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
2012 Standout
Comprehensive molecular portraits of human breast tumours
2012 StandoutNature
Open PHACTS: semantic interoperability for drug discovery
2012
The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations
2016
LINNAEUS: A species name identification system for biomedical literature
2010
The Gene Ontology Resource: 20 years and still GOing strong
2018 Standout
CCancer: a bird's eye view on gene lists reported in cancer-related studies
2010
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
2016 Standout
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare
2020
MINT, the molecular interaction database: 2012 update
2011
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015
2014
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
2015 StandoutNature
Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?
2010
Dicer-TRBP Complex Formation Ensures Accurate Mammalian MicroRNA Biogenesis
2014 StandoutNobel
The Pfam Protein Families Database
2002 Standout
A renaissance for the pioneering 16S rRNA gene
2008
BioLit: integrating biological literature with databases
2008
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
2009
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
The BioGRID Interaction Database: 2011 update
2010
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
AI in health and medicine
2022 Standout
O-Pair Search with MetaMorpheus for O-glycopeptide characterization
2020 StandoutNobel
Megx.net: integrated database resource for marine ecological genomics
2009
Alignment-Free Genome Tree Inference by Learning Group-Specific Distance Metrics
2013
The REDCap consortium: Building an international community of software platform partners
2019 Standout
Machine learning for molecular and materials science
2018 StandoutNature
Metagenomic biomarker discovery and explanation
2011 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
2012 Standout
Advancing Science through Mining Libraries, Ontologies, and Communities
2011
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
2005 Standout
Assessment of predictions submitted for the CASP7 domain prediction category
2007 StandoutNobel
Computational tools for prioritizing candidate genes: boosting disease gene discovery
2012
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Defining the core Arabidopsis thaliana root microbiome
2012 StandoutNature
Biomedical Text Mining and Its Applications
2009
Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization
2013
The Universal Protein Resource (UniProt)
2004 Standout
The BioGRID interaction database: 2013 update
2012
Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
2012 StandoutNobel
Evaluation of Factors Related to Late Recurrence - Later than 10 Years after the Initial Treatment - in Primary Breast Cancer
2013 Standout
miRBase: annotating high confidence microRNAs using deep sequencing data
2013 Standout
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
PubTator: a web-based text mining tool for assisting biocuration
2013
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
Experimental and analytical tools for studying the human microbiome
2011
Literature mining for the biologist: from information retrieval to biological discovery
2006
A combined approach to data mining of textual and structured data to identify cancer-related targets
2006
Protein family classification and functional annotation
2003
miRBase: integrating microRNA annotation and deep-sequencing data
2010 Standout
The Pfam protein families database
2009 Standout
The ChEMBL database in 2017
2016 Standout
I-TASSER: a unified platform for automated protein structure and function prediction
2010 Standout
Comparative analysis of regulatory patterns in bacterial genomes
2000
Recent advances in glycoinformatic platforms for glycomics and glycoproteomics
2019
Application of text mining in the biomedical domain
2015
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Clinical research informatics: a conceptual perspective
2012
UniProt: the Universal Protein knowledgebase
2003 Standout
UniCarbKB: building a knowledge platform for glycoproteomics
2013
The Comparative Toxicogenomics Database: update 2013
2012
Assessment of predictions submitted for the CASP7 function prediction category
2007
Use and misuse of the gene ontology annotations
2008
Ribosomal Database Project: data and tools for high throughput rRNA analysis
2013 Standout
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
2011
Cataloging the Relationships Between Proteins: A Review of Interaction Databases
2006
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
2013 Standout
The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY
2017 Standout
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
2012 Standout
Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials
2015 Standout
GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains
2015
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
2011
Use of Lawesson's Reagent in Organic Syntheses
2007 Standout
A circadian gene expression atlas in mammals: Implications for biology and medicine
2014 Standout
Predicting research trends with semantic and neural networks with an application in quantum physics
2020 StandoutNobel
Molecular signatures database (MSigDB) 3.0
2011 Standout
The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010.
2010
Synthesis and exchange reactions of 5‐alkyl‐2‐oxo‐6‐thioxo‐1,2,3,6‐hexahydropyrimidine‐4‐carboxylic acids
1997
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
miRBase: from microRNA sequences to function
2018 Standout
The BioGRID interaction database: 2019 update
2018
Chemical Glycoproteomics
2016 StandoutNobel
Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS inCaenorhabditis elegans
2015 StandoutNobel
Works of Lynette Hirschman being referenced
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9
2010
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
2008
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
2009
BioCreAtIvE Task 1A: gene mention finding evaluation
2005
An Overview of BioCreative II.5
2010
Text mining for biology - the way forward: opinions from leading scientists
2008
Linking genes to literature: text mining, information extraction, and retrieval applications for biology
2008
Overview of BioCreAtIvE: critical assessment of information extraction for biology
2005
MITRE system for clinical assertion status classification
2011
Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II
2012
Accomplishments and challenges in literature data mining for biology
2002
Effects of personal identifier resynthesis on clinical text de-identification
2010
Rutabaga by any other name: extracting biological names
2002
Overview of BioCreative II gene normalization
2008
Overview of BioCreAtIvE task 1B: normalized gene lists
2005
Text mining for the biocuration workflow
2012
Overview of the BioCreative III Workshop
2011
Do you do text?
2005
Evaluation of text data mining for database curation:lessons learned from the KDD Challenge Cup
2003
Toward a Standards-Compliant Genomic and Metagenomic Publication Record
2008
An experiment in automated health care evaluation from narrative medical records
1981
Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
2008
SugarBind database (SugarBindDB): a resource of pathogen lectins and corresponding glycan targets
2013
Meeting Report: Metagenomics, Metadata and Meta-analysis; (M3) Special Interest Group at ISMB 2009
2009