Citation Impact
Citing Papers
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Global phosphorylation analysis of β-arrestin–mediated signaling downstream of a seven transmembrane receptor (7TMR)
2010 StandoutNobel
The IMEx coronavirus interactome: an evolving map of Coronaviridae –host molecular interactions
2020
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
2021 StandoutNobel
Hrr25 kinase promotes selective autophagy by phosphorylating the cargo receptor A tg19
2014
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
Predicting protein–protein interactions in the context of protein evolution
2009
WGCNA: an R package for weighted correlation network analysis
2008 Standout
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Large‐scale survey and database of high affinity ligands for peptide recognition modules
2020
Disease candidate gene identification and prioritization using protein interaction networks
2009
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data
2024
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
A travel guide to Cytoscape plugins
2012
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
2020 Standout
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants
2021
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
2010 Standout
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
Modular and tunable biological feedback control using a de novo protein switch
2019 StandoutNatureNobel
Systems Biology Approach Reveals Genome to Phenome Correlation in Type 2 Diabetes
2013
Interaction networks as a tool to investigate the mechanisms of aging
2010
A paradigm shift in medicine: A comprehensive review of network-based approaches
2019
ConsensusPathDB: toward a more complete picture of cell biology
2010
The genetics of ageing
2010 StandoutNature
PID: the Pathway Interaction Database
2008
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
From large networks to small molecules
2003
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi
2009 Nature
Hrr25 phosphorylates the autophagic receptor Atg34 to promote vacuolar transport of α‐mannosidase under nitrogen starvation conditions
2014 StandoutNobel
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
HitPredict: a database of quality assessed protein–protein interactions in nine species
2010
The ground state of embryonic stem cell self-renewal
2008 StandoutNature
Program-Specific Distribution of a Transcription Factor Dependent on Partner Transcription Factor and MAPK Signaling
2003
A walk-through of the yeast mating pheromone response pathway
2004
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
2015
Database resources of the National Center for Biotechnology Information: update
2003 Standout
Global Identification of Modular Cullin-RING Ligase Substrates
2011
FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity
2021
mTOR Signaling in Growth, Metabolism, and Disease
2017 Standout
PrePPI: a structure-informed database of protein–protein interactions
2012
VisANT: an integrative framework for networks in systems biology
2008
Ubiquitin-dependent regulation of COPII coat size and function
2012 StandoutNatureNobel
Systematic Evaluation of Molecular Networks for Discovery of Disease Genes
2018
ConsensusPathDB—a database for integrating human functional interaction networks
2008
AnimalTFDB: a comprehensive animal transcription factor database
2011
PIPs: human protein-protein interaction prediction database
2008
Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization
2013
The Polarisome Is Required for Segregation and Retrograde Transport of Protein Aggregates
2010
Molecular chaperones in protein folding and proteostasis
2011 StandoutNature
CRISPR/Cas9-Based Engineering of the Epigenome
2017
Cell signalling and the control of pre-mRNA splicing
2004
Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
2012 StandoutNobel
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
Phase transitions in the assembly of multivalent signalling proteins
2012 StandoutNature
The computational prediction of protein assemblies
2017
Transcriptional regulatory code of a eukaryotic genome
2004 StandoutNature
Exploring protein-protein interactions at the proteome level
2022
The ConsensusPathDB interaction database: 2013 update
2012
Biophysical prediction of protein–peptide interactions and signaling networks using machine learning
2020
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
2008
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
2017
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Understanding multicellular function and disease with human tissue-specific networks
2015
Network-based function prediction and interactomics: The case for metabolic enzymes
2010
Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus
2015 StandoutNatureNobel
The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes
2010
Pathway and network analysis of cancer genomes
2015
Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
2015 StandoutNature
Regulated cell-to-cell variation in a cell-fate decision system
2005 Nature
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
2005
SR Proteins and Related Factors in Alternative Splicing
2007
SNOW, a web-based tool for the statistical analysis of protein–protein interaction networks
2009
Mass spectrometry-based proteomics for systems biology
2011
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
HSP90 at the hub of protein homeostasis: emerging mechanistic insights
2010
FunCoup 4: new species, data, and visualization
2017
An Integrative Approach to Gain Insights into the Cellular Function of Human Ataxin-2
2004
Inflammation, metaflammation and immunometabolic disorders
2017 StandoutNature
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks
2012
Role for protein–protein interaction databases in human genetics
2009
Alternative splicing and RNA selection pressure — evolutionary consequences for eukaryotic genomes
2006
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
2009 Standout
A walk-through of the yeast mating pheromone response pathway
2004
Next-Generation Machine Learning for Biological Networks
2018
Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19
2020 Standout
Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21
2015 StandoutNobel
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes
2018
Alternative Splicing: New Insights from Global Analyses
2006
Genome-wide functional association networks: background, data & state-of-the-art resources
2019
HumanNet v3: an improved database of human gene networks for disease research
2021
Proteomic Analysis of Interchromatin Granule Clusters
2004
Ramshackle (Brwd3) promotes light-induced ubiquitylation of Drosophila Cryptochrome by DDB1-CUL4-ROC1 E3 ligase complex
2013 StandoutNobel
Molecular links between cellular senescence, longevity and age-related diseases – a systems biology perspective
2011
IMID: integrated molecular interaction database
2012
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Hrr25 triggers selective autophagy–related pathways by phosphorylating receptor proteins
2014 StandoutNobel
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis
2021
Target of Rapamycin (TOR) in Nutrient Signaling and Growth Control
2011
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
2023 StandoutNobel
MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions
2009
Kinase requirements in human cells: III. Altered kinase requirements inVHL−/− cancer cells detected in a pilot synthetic lethal screen
2008 StandoutNobel
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
2020
MicroRNA-Regulated Protein–Protein Interaction Networks: How Could They Help in Searching for Pro-Longevity Targets?
2010
Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans
2018
Environmental robustness of the global yeast genetic interaction network
2021 Science
Complex Portal 2022: new curation frontiers
2021
IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
2018
Atg38 is required for autophagy-specific phosphatidylinositol 3-kinase complex integrity
2013 StandoutNobel
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
2014
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Chemical Glycoproteomics
2016 StandoutNobel
Works of Lorrie Boucher being referenced
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
2010 Science
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
2006
The BioGRID interaction database: 2017 update
2016
The BioGRID Interaction Database: 2008 update
2007
The BioGRID Interaction Database: 2011 update
2010
MAPK specificity in the yeast pheromone response independent of transcriptional activation
2001
The BioGRID interaction database: 2013 update
2012
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
2020
Phenotypic and Transcriptional Plasticity Directed by a Yeast Mitogen-Activated Protein Kinase Network
2003
A genome-wide survey of RS domain proteins.
2001
The BioGRID interaction database: 2019 update
2018