Standout Papers
Citation Impact
Citing Papers
Identification of factors required for m 6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI
2017
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
2021 StandoutNobel
JUM is a computational method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patterns
2018
The timing of human adaptation from Neanderthal introgression
2021
Alu elements shape the primate transcriptome by cis-regulation of RNA editing
2014
A survey of best practices for RNA-seq data analysis
2016 Standout
Ten things you should know about transposable elements
2018
jvenn: an interactive Venn diagram viewer
2014 Standout
Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
2015
Ferroptosis: molecular mechanisms and health implications
2020 Standout
The X-linked trichothiodystrophy-causing gene RNF113A links the spliceosome to cell survival upon DNA damage
2020
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Lineage-Specific Changes in Biomarkers in Great Apes and Humans
2015 StandoutNobel
The Biogenesis, Functions, and Challenges of Circular RNAs
2018 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Genetic Modulation of RNA Splicing with a CRISPR-Guided Cytidine Deaminase
2018
Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance
2018 StandoutNobel
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
Molecular mechanisms of epithelial–mesenchymal transition
2014 Standout
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
2013
Human brain evolution: transcripts, metabolites and their regulators
2013
Changes in Lipidome Composition during Brain Development in Humans, Chimpanzees, and Macaque Monkeys
2017 StandoutNobel
Post-transcriptional gene regulation by mRNA modifications
2016 Standout
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
Retroelements and their impact on genome evolution and functioning
2009
A Long ncRNA Links Copy Number Variation to a Polycomb/Trithorax Epigenetic Switch in FSHD Muscular Dystrophy
2012
m6A-LAIC-seq reveals the census and complexity of the m6A epitranscriptome
2016
An ESRP‐regulated splicing programme is abrogated during the epithelial–mesenchymal transition
2010
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
Salmon provides fast and bias-aware quantification of transcript expression
2017 Standout
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
In vitro biocompatibility of bioresorbable polymers: poly(L, DL-lactide) and poly(L-lactide-co-glycolide)
1996
Evolution of a designed protein assembly encapsulating its own RNA genome
2017 StandoutNatureNobel
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
2016 Standout
Long non-coding RNAs: new players in cell differentiation and development
2013 Standout
Atlas of Subcellular RNA Localization Revealed by APEX-Seq
2019
T Cell Receptor Stimulation-Induced Epigenetic Changes and Foxp3 Expression Are Independent and Complementary Events Required for Treg Cell Development
2012 StandoutNobel
U1 snRNP regulates cancer cell migration and invasion in vitro
2020 Standout
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
2013
Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication
2012
Cohesins localize with CTCF at the KSHV latency control region and at cellular c‐myc and H19/Igf2 insulators
2008
mRNA circularization by METTL3–eIF3h enhances translation and promotes oncogenesis
2018 Nature
Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed
2015 Standout
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
2020 Standout
Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers
2019 Standout
Next-generation insights into regulatory T cells: expression profiling and FoxP3 occupancy in Human
2011
m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways
2017 Nature
GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
2014 Standout
m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer
2020 Standout
Evolution of genetic and genomic features unique to the human lineage
2012
Applications of machine learning in drug discovery and development
2019 Standout
The biogenesis, biology and characterization of circular RNAs
2019 Standout
A 3D bioprinting system to produce human-scale tissue constructs with structural integrity
2016 Standout
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
2012
Reading, writing and erasing mRNA methylation
2019 Standout
Selective Autophagy Regulates Insertional Mutagenesis by the Ty1 Retrotransposon in Saccharomyces cerevisiae
2011 StandoutNobel
In vitro bone biocompatibility of poly(anhydride‐co‐imides) containing pyromellitylimidoalanine
1996
Human Brain Evolution: Harnessing the Genomics (R)evolution to Link Genes, Cognition, and Behavior
2010
The Human Condition—A Molecular Approach
2014 StandoutNobel
Long Noncoding RNAs: Cellular Address Codes in Development and Disease
2013 Standout
Regulatory networks defining EMT during cancer initiation and progression
2013 Standout
Human-Specific Transcriptional Networks in the Brain
2012
CTCF: Master Weaver of the Genome
2009 Standout
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
Alternative splicing and evolution: diversification, exon definition and function
2010
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins
2018
Regulatory T Cells: Mechanisms of Differentiation and Function
2007 Standout
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
2012
A new view of transcriptome complexity and regulation through the lens of local splicing variations
2016
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
Mast cell activity in the healing wound: more than meets the eye?
2013
Complementary Sequence-Mediated Exon Circularization
2014 Standout
Pathogenesis of Hepatitis E Virus and Hepatitis C Virus in Chimpanzees: Similarities and Differences
2010
Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development
2022 StandoutNobel
Biodegradable polymers as biomaterials
2007 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Wound Healing: A Cellular Perspective
2018 Standout
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
2014
Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing
2017
A single splice site mutation in human-specific ARHGAP11B causes basal progenitor amplification
2016 StandoutNobel
Epithelial Plasticity: A Common Theme in Embryonic and Cancer Cells
2013 StandoutScience
Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
2011
Works of Lan Lin being referenced
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
CTCF-Dependent Chromatin Boundary Element between the Latency-Associated Transcript and ICP0 Promoters in the Herpes Simplex Virus Type 1 Genome
2007
The contribution of Alu exons to the human proteome
2016
Evolution of alternative splicing in primate brain transcriptomes
2010
Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes
2009
A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species
2010
Using high-density exon arrays to profile gene expression in closely related species
2009
Diverse Splicing Patterns of Exonized Alu Elements in Human Tissues
2008
Dual Targets for Mouse Mast Cell Protease-4 in Mediating Tissue Damage in Experimental Bullous Pemphigoid
2011
The Expanding Landscape of Alternative Splicing Variation in Human Populations
2018
Predicting Functional Alternative Splicing by Measuring RNA Selection Pressure from Multigenome Alignments
2009
Biocompatibility test procedures for materials evaluation in vitro. II. Objective methods of toxicity assessment
1985
Widespread establishment and regulatory impact of Alu exons in human genes
2011