Standout Papers

Unicycler: Resolving bacterial genome assemblies from short and long seque... 2014 2026 2018 2022 5.0k
  1. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads (2017)
    Ryan R. Wick, Louise M. Judd et al. PLoS Computational Biology
  2. Bandage: interactive visualization of de novo genome assemblies (2015)
    Ryan R. Wick, Mark B. Schultz et al. Bioinformatics
  3. Performance of neural network basecalling tools for Oxford Nanopore sequencing (2019)
    Ryan R. Wick, Louise M. Judd et al. Genome biology
  4. SRST2: Rapid genomic surveillance for public health and hospital microbiology labs (2014)
    Michael Inouye, Harriet Dashnow et al. Genome Medicine
  5. The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development (2015)
    Shu Mei Teo, D. Mok et al. Cell Host & Microbe
  6. Population genomics of Klebsiella pneumoniae (2020)
    Kelly L. Wyres, Margaret M. C. Lam et al. Nature Reviews Microbiology
  7. Completing bacterial genome assemblies with multiplex MinION sequencing (2017)
    Ryan R. Wick, Louise M. Judd et al. Microbial Genomics
  8. A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex (2021)
    Margaret M. C. Lam, Ryan R. Wick et al. Nature Communications
  9. Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria (2018)
    Kelly L. Wyres, Kathryn E. Holt Current Opinion in Microbiology
  10. Identification of Klebsiella capsule synthesis loci from whole genome data (2016)
    Kelly L. Wyres, Ryan R. Wick et al. Microbial Genomics
  11. Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (2017)
    Claire L. Gorrie, Mirjana Mirčeta et al. Clinical Infectious Diseases
  12. Polypolish: Short-read polishing of long-read bacterial genome assemblies (2022)
    Ryan R. Wick, Kathryn E. Holt PLoS Computational Biology
  13. Trycycler: consensus long-read assemblies for bacterial genomes (2021)
    Ryan R. Wick, Louise M. Judd et al. Genome biology
  14. Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex (2022)
    Margaret M. C. Lam, Ryan R. Wick et al. Microbial Genomics
  15. Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing (2023)
    Ryan R. Wick, Louise M. Judd et al. PLoS Computational Biology

Immediate Impact

7 by Nobel laureates 14 from Science/Nature 72 standout
Sub-graph 1 of 22

Citing Papers

Integration of 168,000 samples reveals global patterns of the human gut microbiome
2025 Standout
Phage-specific immunity impairs efficacy of bacteriophage targeting Vancomycin Resistant Enterococcus in a murine model
2024 Standout
3 intermediate papers

Works of Kathryn E. Holt being referenced

Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients
2017 Standout
Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci
2013
and 2 more

Author Peers

Author Last Decade Papers Cites
Kathryn E. Holt 8818 9146 5977 219 22.4k
Ole Lund 7643 17676 5244 323 34.9k
Patrick A. D. Grimont 3880 11437 5379 289 24.9k
Torsten Seemann 3776 8504 2850 167 19.5k
Sylvain Brisse 8147 5203 5363 273 18.3k
Fernando Baquero 12237 7630 4278 482 28.6k
Stuart B. Levy 9080 7898 2335 248 23.1k
Harry L. T. Mobley 5240 9236 11256 318 27.9k
José Luis Martínez 9286 7819 3132 258 22.5k
Scott A. Beatson 4814 5447 4363 156 13.3k
Frank M. Aarestrup 15107 10547 9293 417 37.4k

All Works

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Rankless by CCL
2026