Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Programmable RNA recognition using a CRISPR-associated Argonaute
2018 StandoutNobel
Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data
2018
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
Arabidopsis RIN4 Negatively Regulates Disease Resistance Mediated by RPS2 and RPM1 Downstream or Independent of the NDR1 Signal Modulator and Is Not Required for the Virulence Functions of Bacterial Type III Effectors AvrRpt2 or AvrRpm1
2004
Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
2013 StandoutScience
AGO1-miR173 complex initiates phased siRNA formation in plants
2008
Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling in Arabidopsis
2011
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Arabidopsis GH3.12 (PBS3) Conjugates Amino Acids to 4-Substituted Benzoates and Is Inhibited by Salicylate
2009
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Abiotic Stress Signaling and Responses in Plants
2016 Standout
Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing
2010
Motifs specific for the ADR1 NBS–LRR protein family in Arabidopsis are conserved among NBS–LRR sequences from both dicotyledonous and monocotyledonous plants
2005
Type III effector proteins: doppelgangers of bacterial virulence
2006
Targets of RNA-directed DNA methylation
2007
Salicylic acid in plant defence—the players and protagonists
2007
Dicer-TRBP Complex Formation Ensures Accurate Mammalian MicroRNA Biogenesis
2014 StandoutNobel
DNA recognition by an RNA-guided bacterial Argonaute
2017 StandoutNobel
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline
2012 StandoutNobel
Cnidarian microRNAs frequently regulate targets by cleavage
2014
RNA-based recognition and targeting: sowing the seeds of specificity
2017 StandoutNobel
The Decapping Scavenger Enzyme DCS-1 Controls MicroRNA Levels in Caenorhabditis elegans
2013 StandoutNobel
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions
2013
Computational and analytical framework for small RNA profiling by high-throughput sequencing
2009
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
2013 Nature
Tertiary siRNAs Mediate Paramutation in C. elegans
2015
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
A Functional Genomics Approach Identifies Candidate Effectors from the Aphid Species Myzus persicae (Green Peach Aphid)
2010
The JAZ family of repressors is the missing link in jasmonate signalling
2007 StandoutNature
CD-HIT: accelerated for clustering the next-generation sequencing data
2012 Standout
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Mapping of internal monophosphate 5′ ends ofBacillus subtilismessenger RNAs and ribosomal RNAs in wild-type and ribonuclease-mutant strains
2016
Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae
2011
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
2011 Standout
A Key Role for the Arabidopsis WIN3 Protein in Disease Resistance Triggered by Pseudomonas syringae That Secrete AvrRpt2
2007
A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
2011 Standout
Metazoan MicroRNAs
2018 Standout
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
Noncoding RNA in development
2008
The surveillance of pre-mRNA splicing is an early step in C. elegans RNAi of endogenous genes
2018 StandoutNobel
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
2014 StandoutNobel
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
Distinct Phases of siRNA Synthesis in an Endogenous RNAi Pathway in C. elegans Soma
2010 Nobel
Diversifying microRNA sequence and function
2013
Biological principles of microRNA-mediated regulation: shared themes amid diversity
2008
Origin, Biogenesis, and Activity of Plant MicroRNAs
2009 Standout
Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
2006 Standout
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Dual coding of siRNAs and miRNAs by plant transposable elements
2008
Structure of yeast Argonaute with guide RNA
2012 Nature
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
2008 Standout
Dual Regulation of the lin-14 Target mRNA by the lin-4 miRNA
2013 StandoutNobel
miRBase: integrating microRNA annotation and deep-sequencing data
2010 Standout
Systemic acquired resistance: the elusive signal(s)
2008
The Top 10 fungal pathogens in molecular plant pathology
2012 Standout
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
The Dark Side of the Salad: Salmonella typhimurium Overcomes the Innate Immune Response of Arabidopsis thaliana and Shows an Endopathogenic Lifestyle
2008 StandoutNobel
Diamonds in the rough: mRNA-like non-coding RNAs
2008
IsomiRs – the overlooked repertoire in the dynamic microRNAome
2012
The Pfam protein families database
2011 Standout
Computational Identification and Functional Predictions of Long Noncoding RNA in Zea mays
2012
MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship
2012
DNA structure in human RNA polymerase II promoters 1 1Edited by J. Karn
1998 StandoutNobel
The Functions of MicroRNAs: mRNA Decay and Translational Repression
2015
The database of experimentally supported targets: a functional update of TarBase
2008
A variety of DNA-binding and multimeric proteins contain the histone fold motif
1995
starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
2010
The plant immune system
2006 StandoutNature
Experimental strategies for microRNA target identification
2011
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
2013 Standout
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Dual Regulation Role of GH3.5 in Salicylic Acid and Auxin Signaling during Arabidopsis-Pseudomonas syringae Interaction
2007
A Cas9–guide RNA complex preorganized for target DNA recognition
2015 StandoutScienceNobel
Salicylic Acid, a Multifaceted Hormone to Combat Disease
2009 Standout
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
2010
Improving Protein Expression, Stability, and Function with ProteinMPNN
2024 StandoutNobel
Helitrons , the Eukaryotic Rolling-circle Transposable Elements
2015
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
Distribution, diversity, evolution, and survival of Helitrons in the maize genome
2009
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
The histone fold: evolutionary questions.
1995 StandoutNobel
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
2011 Standout
UniRef: comprehensive and non-redundant UniProt reference clusters
2007
miRBase: from microRNA sequences to function
2018 Standout
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
2011 StandoutNobel
The Rice Annotation Project Database (RAP-DB): 2008 update
2007
Works of Kan Nobuta being referenced
Convergent Evolution of Disease Resistance Gene Specificity in Two Flowering Plant Families[W]
2004
Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods
2006
An expression atlas of rice mRNAs and small RNAs
2007
Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing
2011
Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends
2008
RNA-mediated trans -communication can establish paramutation at the b1 locus in maize
2010
Genomic and Genetic Characterization of RiceCen3Reveals Extensive Transcription and Evolutionary Implications of a Complex Centromere
2006
Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
2008
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
2008
The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile
2009
Sequencing and expression of the 6'-N-acetyltransferase gene of transposon Tn1331 from Klebsiella pneumoniae
1988
The GH3 Acyl Adenylase Family Member PBS3 Regulates Salicylic Acid-Dependent Defense Responses in Arabidopsis
2007