Standout Papers

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies ... 2008 2026 2014 2020 10.9k
  1. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification (2008)
    Jürgen Cox, Matthias Mann Nature Biotechnology
  2. The Perseus computational platform for comprehensive analysis of (prote)omics data (2016)
    Stefka Tyanova, Pavel Sinitcyn et al. Nature Methods
  3. Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment (2011)
    Jürgen Cox, Nadin Neuhauser et al. Journal of Proteome Research
  4. Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ (2014)
    Jürgen Cox, Marco Y. Hein et al. Molecular & Cellular Proteomics
  5. Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis (2010)
    Jesper V. Olsen, Michiel Vermeulen et al. Science Signaling
  6. A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances (2015)
    Marco Y. Hein, Nina C. Hubner et al. Cell
  7. Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling (2014)
    Kirti Sharma, Rochelle C. J. D’Souza et al. Cell Reports
  8. A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles (2011)
    Sebastian Wagner, Petra Beli et al. Molecular & Cellular Proteomics
  9. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast (2008)
    Lyris Martins Franco de Godoy, Jesper V. Olsen et al. Nature
  10. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics (2009)
    Jürgen Cox, Ivan Matić et al. Nature Protocols
  11. Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer (2018)
    Florian Meier, Heiner Koch et al. Molecular & Cellular Proteomics
  12. Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology (2011)
    Jürgen Cox, Matthias Mann Annual Review of Biochemistry
  13. Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry (2016)
    Michal Bassani‐Sternberg, Eva Bräunlein et al. Nature Communications
  14. A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards (2014)
    Jacek R. Wiśniewski, Marco Y. Hein et al. Molecular & Cellular Proteomics
  15. Global, quantitative and dynamic mapping of protein subcellular localization (2016)
    Daniel N. Itzhak, Stefka Tyanova et al. eLife

Immediate Impact

5 by Nobel laureates 61 from Science/Nature 119 standout
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Citing Papers

Mass-spectrometry-based proteomics: from single cells to clinical applications
2025 StandoutNature
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2025 StandoutNatureNobel
132 intermediate papers

Works of Jürgen Cox being referenced

MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides
2019
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
and 50 more

Author Peers

Author Last Decade Papers Cites
Jürgen Cox 27977 9108 5222 92 38.7k
Matthias Wilm 25961 7375 5423 124 36.1k
Jesper V. Olsen 29871 11395 4268 256 39.6k
Andrej Shevchenko 29508 6273 6307 228 41.8k
Darryl Pappin 16780 6934 2790 136 23.7k
Patrick H. O’Farrell 24905 3328 7201 140 34.0k
Michael P. Washburn 21071 5744 2159 256 27.3k
Akhilesh Pandey 20546 7753 2763 485 31.0k
Jeffrey Shabanowitz 22356 8097 3176 322 34.4k
Donald F. Hunt 24721 9357 3700 405 39.6k
Jimmy K. Eng 19186 12812 1866 143 27.1k

All Works

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2026