Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
HTSeq—a Python framework to work with high-throughput sequencing data
2014 Standout
Trans-splicing of the C. elegans let-7 primary transcript developmentally regulates let-7 microRNA biogenesis and let-7 family microRNA activity
2019 StandoutNobel
Reciprocal Regulation of DUSP9 and DUSP16 Expression by HIF1 Controls ERK and p38 MAP Kinase Activity and Mediates Chemotherapy-Induced Breast Cancer Stem Cell Enrichment
2018 StandoutNobel
Reactive Oxygen Species in Inflammation and Tissue Injury
2013 Standout
Differential expression analysis for sequence count data
2010 Standout
Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA
2006
Differential analysis of gene regulation at transcript resolution with RNA-seq
2012 Standout
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation
2010 Standout
Protein factors in pre-mRNA 3′-end processing
2007
Reprogramming of 3′ Untranslated Regions of mRNAs by Alternative Polyadenylation in Generation of Pluripotent Stem Cells from Different Cell Types
2009
Impulsivity, Compulsivity, and Top-Down Cognitive Control
2011 Standout
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
The trRosetta server for fast and accurate protein structure prediction
2021 StandoutNobel
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
2011 Standout
FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
2011 Standout
Systematic Profiling of Poly(A)+ Transcripts Modulated by Core 3’ End Processing and Splicing Factors Reveals Regulatory Rules of Alternative Cleavage and Polyadenylation
2015
Protein microarrays with carbon nanotubes as multicolor Raman labels
2008
A Graphene Platform for Sensing Biomolecules
2009 Standout
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
C. eleganssequences that controltrans-splicing and operon pre-mRNA processing
2007
The Poly(A)-Binding Protein Nuclear 1 Suppresses Alternative Cleavage and Polyadenylation Sites
2012
Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells
2014
Alternative polyadenylation of mRNA precursors
2016
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Widespread Translational Remodeling during Human Neuronal Differentiation
2017 StandoutNobel
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
RNA-Seq Gene Profiling - A Systematic Empirical Comparison
2014
The role of the 3' untranslated region in post-transcriptional regulation of protein expression in mammalian cells.
2012
U1 snRNP regulates cancer cell migration and invasion in vitro
2020 Standout
MicroRNA therapeutics: towards a new era for the management of cancer and other diseases
2017 Standout
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
2008 Nature
Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
2012 Standout
Oxidative Stress in Cancer
2020 Standout
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology
2022 Standout
Multiplexed quantification of proteins and transcripts in single cells
2017
U1 snRNP Determines mRNA Length and Regulates Isoform Expression
2012
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
Shell-isolated nanoparticle-enhanced Raman spectroscopy
2010 StandoutNature
Reading, writing and erasing mRNA methylation
2019 Standout
Promoter directionality is controlled by U1 snRNP and polyadenylation signals
2013 Nature
Prefrontal cortex AMPA receptor plasticity is crucial for cue-induced relapse to heroin-seeking
2008
Accelerated Profile HMM Searches
2011 Standout
The Expanding Landscape of the Thiol Redox Proteome
2015
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
2007 Standout
Comprehensive Integration of Single-Cell Data
2019 Standout
Mechanisms and Consequences of Alternative Polyadenylation
2011
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Molecular Architecture of the Human Pre-mRNA 3′ Processing Complex
2009 StandoutNobel
The HDOCK server for integrated protein–protein docking
2020
RNA processing and its regulation: global insights into biological networks
2009
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
The pros, cons, and many unknowns of probiotics
2019 Standout
Methods to Study Splicing from High-Throughput RNA Sequencing Data
2014
miR-21 Gene Expression Triggered by AP-1 Is Sustained through a Double-Negative Feedback Mechanism
2008
Genome Regulation by Long Noncoding RNAs
2012 Standout
Additive assay of cancer marker CA 19-9 by SPR biosensor
2006
Probiotic Product Enhances Susceptibility of Mice to Cryptosporidiosis
2018
Mitochondrial Reactive Oxygen Species (ROS) and ROS-Induced ROS Release
2014 Standout
Infernal 1.1: 100-fold faster RNA homology searches
2013 Standout
Redox Proteomics: Chemical Principles, Methodological Approaches and Biological/Biomedical Promises
2012
Upregulation of Nox4 by Hypertrophic Stimuli Promotes Apoptosis and Mitochondrial Dysfunction in Cardiac Myocytes
2010
Biased chromatin signatures around polyadenylation sites and exons
2012
NADPH oxidase 4 (Nox4) is a major source of oxidative stress in the failing heart
2010
Carbon Nanotubes: Present and Future Commercial Applications
2013 StandoutScience
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
Carbon Nanomaterials for Biological Imaging and Nanomedicinal Therapy
2015 Standout
De novo design of small beta barrel proteins
2023 StandoutNobel
Pathways for Sensing and Responding to Hydrogen Peroxide at the Endoplasmic Reticulum
2020
Reactive Oxygen Species (ROS)-Based Nanomedicine
2019 Standout
Surface Plasmon Resonance Sensors for Detection of Chemical and Biological Species
2008 Standout
Reactive Oxygen Species in Metabolic and Inflammatory Signaling
2018 Standout
A Deep Neural Network for Predicting and Engineering Alternative Polyadenylation
2019
Structural RNA Homology Search and Alignment Using Covariance Models
2009
Recent advances in the role of probiotics and prebiotics in carp aquaculture: A review
2015 Standout
Works of Jun Hu being referenced
A method for aligning RNA secondary structures and its application to RNA motif detection
2005
Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine‐specific isobaric tags
2006
Abrupt suspension of probiotics administration may increase host pathogen susceptibility by inducing gut dysbiosis
2016
A multiplexed proteomics approach to differentiate neurite outgrowth patterns
2006
Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation
2005
A cancer protein microarray platform using antibody fragments and its clinical applications
2006
Simultaneous multianalysis for tumor markers by antibody fragments microarray system
2004
Effects of dietary Saccharomyces cerevisiae culture or live cells with Bacillus amyloliquefaciens spores on growth performance, gut mucosal morphology, hsp70 gene expression, and disease resistance of juvenile common carp (Cyprinus carpio)
2015
OSA: a fast and accurate alignment tool for RNA-Seq
2012
Quantitative Analysis of Redox-Sensitive Proteome with DIGE and ICAT
2008