Standout Papers
Citation Impact
Citing Papers
What is the total number of protein molecules per cell volume? A call to rethink some published values
2013
Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links
2015 Science
Cyclic GMP-AMP Synthase Is a Cytosolic DNA Sensor That Activates the Type I Interferon Pathway
2012 StandoutScience
TFEB Links Autophagy to Lysosomal Biogenesis
2011 StandoutScience
Dynamic profiling of the protein life cycle in response to pathogens
2015 Science
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
Modulation of immune cell reactivity with cis -binding Siglec agonists
2021 StandoutNobel
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
Probing isoform-specific functions of polypeptide GalNAc-transferases using zinc finger nuclease glycoengineered SimpleCells
2012
A Disintegrin and Metalloproteinase 9 Domain (ADAM9) Is a Major Susceptibility Factor in the Early Stages of Encephalomyocarditis Virus Infection
2019
Application of bio-orthogonal proteome labeling to cell transplantation and heterochronic parabiosis
2017
Next-generation analysis of gene expression regulation – comparing the roles of synthesis and degradation
2015
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease
2016
Transcriptomic portrait of human Mesenchymal Stromal/Stem cells isolated from bone marrow and placenta
2014
Design of a mucin-selective protease for targeted degradation of cancer-associated mucins
2023 Nobel
Releasing N-glycan from Peptide N-terminus by N-terminal Succinylation Assisted Enzymatic Deglycosylation
2015
Proteomic Analysis of Exosomes from Mutant KRAS Colon Cancer Cells Identifies Intercellular Transfer of Mutant KRAS
2012
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Characterization of Functional Reprogramming during Osteoclast Development Using Quantitative Proteomics and mRNA Profiling
2014
Protein synthesis rate is the predominant regulator of protein expression during differentiation
2013
Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs
2011
iTRAQ Labeling is Superior to mTRAQ for Quantitative Global Proteomics and Phosphoproteomics
2011
Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma
2012
A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards
2014
Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics
2012
Transcriptome and proteome quantification of a tumor model provides novel insights into post‐transcriptional gene regulation
2013
Cell type-selective secretome profiling in vivo
2020 StandoutNobel
Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast
2012
Precision mapping of the human O‐GalNAc glycoproteome through SimpleCell technology
2013
mTOR Signaling in Growth Control and Disease
2012 Standout
Cell type– and brain region–resolved mouse brain proteome
2015
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Widespread Proteome Remodeling and Aggregation in Aging C. elegans
2015
A new cellular stress response that triggers centriolar satellite reorganization and ciliogenesis
2013
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
Alternative mRNA transcription, processing, and translation: insights from RNA sequencing
2015
Electron transfer dissociation mass spectrometry in proteomics
2012
Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis
2018
MAPU 2.0: high-accuracy proteomes mapped to genomes
2008
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods
2017
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
2011 Standout
Global Proteome Analysis of the NCI-60 Cell Line Panel
2013
Integrated Omic analysis of lung cancer reveals metabolism proteome signatures with prognostic impact
2014
Beyond protein expression, MOPED goes multi-omics
2014
Accurate Protein Complex Retrieval by Affinity Enrichment Mass Spectrometry (AE-MS) Rather than Affinity Purification Mass Spectrometry (AP-MS)
2014
Novel proteomic approach (PUNCH-P) reveals cell cycle-specific fluctuations in mRNA translation
2013
A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape
2019 StandoutNobel
Expression kinetics of nucleoside-modified mRNA delivered in lipid nanoparticles to mice by various routes
2015 StandoutNobel
Multibatch TMT Reveals False Positives, Batch Effects and Missing Values
2019
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
2015
O-GlcNAc profiling: from proteins to proteomes
2014
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Revealing the human mucinome
2022 StandoutNobel
Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database
2011
Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints
2010
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
2014
2016 update of the PRIDE database and its related tools
2015 Standout
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
2012 Standout
Ubiquitin Modulates Liquid-Liquid Phase Separation of UBQLN2 via Disruption of Multivalent Interactions
2018
Mass spectrometric protein maps for biomarker discovery and clinical research
2013
Robust phosphoproteome enrichment using monodisperse microsphere–based immobilized titanium (IV) ion affinity chromatography
2013
TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach
2019
Mapping Yeast N-Glycosites with Isotopically Recoded Glycans
2012 StandoutNobel
A Mass Spectrometric-Derived Cell Surface Protein Atlas
2015
Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells
2012
Primate iPS cells as tools for evolutionary analyses
2014 StandoutNobel
Glypican-1 identifies cancer exosomes and detects early pancreatic cancer
2015 StandoutNature
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
QuaNCAT: quantitating proteome dynamics in primary cells
2013
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
2012 Standout
Mass spectrometry-based proteomics for systems biology
2011
Quantitative Proteomic Analysis of Cellular Protein Modulation upon Inhibition of the NEDD8-Activating Enzyme by MLN4924
2011
A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells
2011
Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues
2015
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method
2010
Lysosome-targeting chimaeras for degradation of extracellular proteins
2020 StandoutNatureNobel
Cell-selective proteomics for biological discovery
2017
LRRC8 Proteins Form Volume-Regulated Anion Channels that Sense Ionic Strength
2016 StandoutNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism
2014
The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
2012
Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry
2013
Mapping N-Glycosylation Sites across Seven Evolutionarily Distant Species Reveals a Divergent Substrate Proteome Despite a Common Core Machinery
2012
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21
2015 StandoutNobel
In vivo 3′-to-5′ exoribonuclease targetomes of Streptococcus pyogenes
2018 StandoutNobel
Systems-wide Proteomic Analysis in Mammalian Cells Reveals Conserved, Functional Protein Turnover
2011
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
RNA–protein analysis using a conditional CRISPR nuclease
2013 StandoutNobel
The Art of Destruction: Optimizing Collision Energies in Quadrupole-Time of Flight (Q-TOF) Instruments for Glycopeptide-Based Glycoproteomics
2016
Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions
2012
The application of targeted mass spectrometry‐based strategies to the detection and localization of post‐translational modifications
2014
Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer
2012
The quantitative proteome of a human cell line
2011
Protein Analysis by Shotgun/Bottom-up Proteomics
2013
Highly Efficient Release of Glycopeptides from Hydrazide Beads by Hydroxylamine Assisted PNGase F Deglycosylation for N-Glycoproteome Analysis
2015
Lysosomal cathepsin D mediates endogenous mucin glycodomain catabolism in mammals
2022 StandoutNobel
Prediction of kinase-specific phosphorylation sites using conditional random fields
2008
Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3
2018
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell‐lines
2015
Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
2014
Glycocapture‐based proteomics for secretome analysis
2012
ATPase activity of the DEAD-box protein Dhh1 controls processing body formation
2016
Improved Precursor Characterization for Data-Dependent Mass Spectrometry
2017
Engineering Orthogonal Polypeptide GalNAc-Transferase and UDP-Sugar Pairs
2019 StandoutNobel
Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer
2013
Copper induces cell death by targeting lipoylated TCA cycle proteins
2022 StandoutScience
Modular repeat protein sculpting using rigid helical junctions
2020 StandoutNobel
A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery
2015
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Comparative conservation analysis of the human mitotic phosphoproteome
2008
Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling
2015
Targeted Delivery of mRNA with One-Component Ionizable Amphiphilic Janus Dendrimers
2021 StandoutNobel
Functional Mapping of the Zebrafish Early Embryo Proteome and Transcriptome
2014
Glycosidase and glycan polymorphism control hydrolytic release of immunogenic flagellin peptides
2019 Science
Rational Design of Bisphosphonate Lipid-like Materials for mRNA Delivery to the Bone Microenvironment
2022 StandoutNobel
Arylfluorosulfates Inactivate Intracellular Lipid Binding Protein(s) through Chemoselective SuFEx Reaction with a Binding Site Tyr Residue
2016 StandoutNobel
S-Trap, an Ultrafast Sample-Preparation Approach for Shotgun Proteomics
2018
Multiple Click-Selective tRNA Synthetases Expand Mammalian Cell-Specific Proteomics
2018 StandoutNobel
Comparative ribosome profiling reveals extensive translational complexity in differentTrypanosoma bruceilife cycle stages
2014
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne
2016 StandoutNobel
E3 ubiquitin ligase Mindbomb 1 facilitates nuclear delivery of adenovirus genomes
2020 StandoutNobel
Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically disordered proteins in C. elegans
2014 StandoutNobel
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Chemical Glycoproteomics
2016 StandoutNobel
Glyco-seek: Ultrasensitive Detection of Protein-Specific Glycosylation by Proximity Ligation Polymerase Chain Reaction
2016 StandoutNobel
Works of Jüergen Cox being referenced
Proteomic Portrait of Human Breast Cancer Progression Identifies Novel Prognostic Markers
2012
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles
2015
Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins
2012
The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics *
2015
N-linked Glycosylation Enrichment for In-depth Cell Surface Proteomics of Diffuse Large B-cell Lymphoma Subtypes
2013
Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse
2013
System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap
2011
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
2011
Super-SILAC mix for quantitative proteomics of human tumor tissue
2010
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
2016 Standout
BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes
2018
1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data
2012
Proteomic maps of breast cancer subtypes
2016
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
2007
EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification
2018
Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation
2011
Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation
2010
Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome
2016
Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes
2011
More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS
2011
Cell-Type-Resolved Quantitative Proteomics of Murine Liver
2014
Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer
2011
Proteomic Changes Resulting from Gene Copy Number Variations in Cancer Cells
2010
Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database
2012
Visualization of LC‐MS/MS proteomics data in MaxQuant
2015
Deep proteome and transcriptome mapping of a human cancer cell line
2011 StandoutNobel
Defining the transcriptome and proteome in three functionally different human cell lines
2010
Feasibility of Large-Scale Phosphoproteomics with Higher Energy Collisional Dissociation Fragmentation
2010