Citation Impact
Citing Papers
ShinyGO: a graphical gene-set enrichment tool for animals and plants
2019 Standout
The human disease network
2007 Standout
Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data
2017
Pathway Databases: A Case Study in Computational Symbolic Theories
2001 Science
Hierarchical Organization of Modularity in Metabolic Networks
2002 StandoutScience
Copper-free click chemistry in living animals
2010 StandoutNobel
Insights from 20 years of bacterial genome sequencing
2015
De novo design of modular and tunable protein biosensors
2021 StandoutNatureNobel
WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data
2006
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
2010 Standout
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
2015 Standout
Network biology: understanding the cell's functional organization
2004 Standout
Metabolomics in human nutrition: opportunities and challenges
2005
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
2003 Standout
Combinatorial and computational challenges for biocatalyst design
2001 StandoutNatureNobel
Recent developments and future directions in computational genomics
2000
Functional cartography of complex metabolic networks
2005 StandoutNature
PID: the Pathway Interaction Database
2008
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
An efficient algorithm for large-scale detection of protein families
2002 Standout
Detection of Peptides, Proteins, and Drugs That Selectively Interact With Protein Targets
2002 StandoutNobel
Tools for in silico target fishing
2014
Pathway information for systems biology
2005
SCENIC: single-cell regulatory network inference and clustering
2017 Standout
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
2011 Standout
GeneSetDB: A comprehensive meta‐database, statistical and visualisation framework for gene set analysis
2012
Network medicine: a network-based approach to human disease
2010 Standout
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
2010 Standout
Database resources of the National Center for Biotechnology Information: update
2003 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
Metabolomics and systems biology: making sense of the soup
2004
Metabolic modeling of microbial strains in silico
2001
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
2009
The outcomes of pathway database computations depend on pathway ontology
2006
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
2005 Standout
ConsensusPathDB—a database for integrating human functional interaction networks
2008
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
2001
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
2003 Standout
Comparing the Chemical Structure and Protein Content of ChEMBL, DrugBank, Human Metabolome Database and the Therapeutic Target Database
2013
Pathway Commons, a web resource for biological pathway data
2010
Metabolomics: beyond biomarkers and towards mechanisms
2016 Standout
Reactome: a knowledge base of biologic pathways and processes
2007
MetaCyc: a multiorganism database of metabolic pathways and enzymes
2005
Towards multidimensional genome annotation
2006
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
2005
The EcoCyc and MetaCyc databases
2000
Characterizing the metabolic phenotype: A phenotype phase plane analysis
2001
Global Properties of the Metabolic Map of Escherichia coli
2000
The EcoCyc Database
2002
Understanding the Intersections between Metabolism and Cancer Biology
2017 Standout
Gut microbiota, metabolites and host immunity
2016 Standout
What is flux balance analysis?
2010 Standout
Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data
2018
3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data
2013
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae
2002
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks
2010
Unique microRNA molecular profiles in lung cancer diagnosis and prognosis
2006 Standout
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Searching for drug targets in microbial genomes
1999
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
The mouse as a model for human biology: a resource guide for complex trait analysis
2006
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
Heterogeneity of tumor-induced gene expression changes in the human metabolic network
2013
Polyamines: Emerging players in bacteria–host interactions
2013
Fingerprinting food: current technologies for the detection of food adulteration and contamination
2012 Standout
The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY
2017 Standout
Search and Discovery Strategies for Biotechnology: the Paradigm Shift
2000
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
2012 Standout
Global reconstruction of the human metabolic network based on genomic and bibliomic data
2007
Magnesium in Man: Implications for Health and Disease
2014 Standout
Systems Biology: A Brief Overview
2002 StandoutScience
Metabolic Flux Responses to Pyruvate Kinase Knockout in Escherichia coli
2002 StandoutNobel
Redefinition of the Yeast Two-Hybrid System in Dialogue with Changing Priorities in Biological Research
2001
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
2000
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis
2021
Complex networks: Structure and dynamics
2006 Standout
Evaluation of computational metabolic-pathway predictions forHelicobacter pylori
2002
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
2013 Standout
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Metabolic reprogramming and cancer progression
2020 StandoutScience
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
2018 Standout
Tutorial on Monoclonal Antibody Pharmacokinetics and Its Considerations in Early Development
2018
Metabolomics in human nutrition: opportunities and challenges
2005
PubChem in 2021: new data content and improved web interfaces
2020 Standout
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
The Edinburgh human metabolic network reconstruction and its functional analysis
2007
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Jonathan Wagg being referenced
Integrated pathway–genome databases and their role in drug discovery
1999
Challenges and Opportunities for Quantitative Clinical Pharmacology in Cancer Immunotherapy: Something Old, Something New, Something Borrowed, and Something Blue
2015
Computational prediction of human metabolic pathways from the complete human genome
2004