Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
2017 Standout
Positional cloning of the wheat vernalization gene VRN1
2003 Standout
Copper-free click chemistry in living animals
2010 StandoutNobel
Genetic Influences on Brain Gene Expression in Rats Selected for Tameness and Aggression
2014 StandoutNobel
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
2008 Standout
Tryptophan Catabolites from Microbiota Engage Aryl Hydrocarbon Receptor and Balance Mucosal Reactivity via Interleukin-22
2013 Standout
CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing
2017 StandoutNobel
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
2011 Standout
From stress to inflammation and major depressive disorder: A social signal transduction theory of depression.
2014 Standout
Genetics of dark skin in mice
2003
Power of in silico QTL mapping from phenotypic, pedigree, and marker data in a hybrid breeding program
2005
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
2003
Mechanisms and Functional Implications of Adult Neurogenesis
2008 Standout
Molecular imaging in living subjects: seeing fundamental biological processes in a new light
2003 Standout
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
Analytical and statistical approaches to metabolomics research
2009
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
Adipocyte dysfunctions linking obesity to insulin resistance and type 2 diabetes
2008 Standout
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
2005 Standout
Toll-like Receptors and Their Crosstalk with Other Innate Receptors in Infection and Immunity
2011 Standout
Reduced expression of TLR3, TLR10 and TREM1 by human macrophages in Chronic cavitary pulmonary aspergillosis, and novel associations of VEGFA, DENND1B and PLAT
2014
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
2007 Standout
Sepsis-induced immunosuppression: from cellular dysfunctions to immunotherapy
2013 Standout
Catechol- O -methyltransferase inhibition increases pain sensitivity through activation of both β2- and β3-adrenergic receptors
2006
Computational searches for splicing signals
2005
Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA
2003 StandoutNobel
SNP discovery via 454 transcriptome sequencing
2007
Using the Acropora digitifera genome to understand coral responses to environmental change
2011 StandoutNature
Genetic Regulation of Behavioral and Neuronal Responses to Fluoxetine
2007
WNT signaling in bone homeostasis and disease: from human mutations to treatments
2013 Standout
Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits
2005
GeneSeqer@PlantGDB: gene structure prediction in plant genomes
2003
Complex-trait genetics: emergence of multivariate strategies
2002
Circadian clock control of the cellular response to DNA damage
2010 StandoutNobel
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
2010 Standout
Human Splicing Finder: an online bioinformatics tool to predict splicing signals
2009 Standout
An Efficient SNP System for Mouse Genome Scanning and Elucidating Strain Relationships
2004
Surface phenotype and antigenic specificity of human interleukin 17–producing T helper memory cells
2007 Standout
Models and Mechanisms of Hyperalgesia and Allodynia
2009
Analysis of quantitative trait loci that influence animal behavior
2002
Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus
2004
Accessing genetic variation: genotyping single nucleotide polymorphisms
2001
An integrated computational pipeline and database to support whole-genome sequence annotation
2002 StandoutNobel
Computational Discovery of Internal Micro-Exons
2003
RNA-Seq: a revolutionary tool for transcriptomics
2008 Standout
ESTMAP: a system for expressed sequence tags mapping on genomic sequences
2003
Genome-wide association studies for common diseases and complex traits
2005 Standout
Genetics of osteoporosis: accelerating pace in gene identification and validation
2009
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
2014 Standout
A hitchhiker's guide to expressed sequence tag (EST) analysis
2006
Immunity to fungal infections
2011 Standout
Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes
2002
Full-length messenger RNA sequences greatly improve genome annotation
2002
Gene discovery and annotation using LCM-454 transcriptome sequencing
2006
Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan
2003 StandoutNature
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
A beginner's guide to eukaryotic genome annotation
2012
The mouse as a model for human biology: a resource guide for complex trait analysis
2006
Phytozome: a comparative platform for green plant genomics
2011 Standout
Mutations in GNA11 in Uveal Melanoma
2010 Standout
Nociceptors: the sensors of the pain pathway
2010 StandoutNobel
Activating Mutations in the Epidermal Growth Factor Receptor Underlying Responsiveness of Non–Small-Cell Lung Cancer to Gefitinib
2004 Standout
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
2008 StandoutNature
Features of Arabidopsis Genes and Genome Discovered using Full-length cDNAs
2006
Mixed linear model approach adapted for genome-wide association studies
2010 Standout
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Nanozymes: Classification, Catalytic Mechanisms, Activity Regulation, and Applications
2019 Standout
Discovery, Optimization, and Biological Evaluation of 5-(2-(Trifluoromethyl)phenyl)indazoles as a Novel Class of Transient Receptor Potential A1 (TRPA1) Antagonists
2014 StandoutNobel
Progress in Genetic Studies of Pain and Analgesia
2008
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Functional mapping of disease susceptibility loci using cell biology
2006 StandoutNobel
Engineering a software tool for gene structure prediction in higher organisms
2005
Practice Guidelines for the Diagnosis and Management of Aspergillosis: 2016 Update by the Infectious Diseases Society of America
2016 Standout
Optimal spliced alignments of short sequence reads
2008
Rat genetics: attachign physiology and pharmacology to the genome
2002
Circadian Timing in Cancer Treatments
2010
Temporomandibular Disorders
2008 Standout
Optimal spliced alignments of short sequence reads
2008
Improved spliced alignment from an information theoretic approach
2005
Comparative Sequence Analysis of Colinear Barley and Rice Bacterial Artificial Chromosomes
2001
Genetic Architecture of Tameness in a Rat Model of Animal Domestication
2009 StandoutNobel
Rapid metabolic evolution in human prefrontal cortex
2011 StandoutNobel
The Genetic Landscape of Type 2 Diabetes in Mice
2007
TopHat: discovering splice junctions with RNA-Seq
2009 Standout
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features
2012
SpliceNest: visualizing gene structure and alternative splicing based on EST clusters
2002
Gene recognition in eukaryotic DNA by comparison of genomic sequences
2001
Works of Jonathan Usuka being referenced
Optimal spliced alignment of homologous cDNA to a genomic DNA template
2000
In silico pharmacogenetics of warfarin metabolism
2006
Computational genetics: from mouse to human?
2005
Plasminogen Alleles Influence Susceptibility to Invasive Aspergillosis
2008
In Silico Genetics: Identification of a Functional Element Regulating H2 - E α Gene Expression
2004 Science
A Genetic Analysis of Opioid-induced Hyperalgesia in Mice
2006
In silico and in vitro pharmacogenetic analysis in mice
2007
In Silico Mapping of Complex Disease-Related Traits in Mice
2001 Science
2D NMR metabonomic analysis: a novel method for automated peak alignment
2007
Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring11Edited by G. von Heijne
2000