Citation Impact
Citing Papers
Modulation of immune cell reactivity with cis -binding Siglec agonists
2021 StandoutNobel
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
The mammalian target of rapamycin regulates cholesterol biosynthetic gene expression and exhibits a rapamycin-resistant transcriptional profile
2011
Dynamics of mTORC1 activation in response to amino acids
2016
Loss of C9 ORF 72 impairs autophagy and synergizes with polyQ Ataxin‐2 to induce motor neuron dysfunction and cell death
2016
DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity
2018 StandoutNobel
TSC1 Activates TGF-β-Smad2/3 Signaling in Growth Arrest and Epithelial-to-Mesenchymal Transition
2015
The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
2013
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
2013
Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation
2015 StandoutNobel
UV Light Potentiates STING (Stimulator of Interferon Genes)-dependent Innate Immune Signaling through Deregulation of ULK1 (Unc51-like Kinase 1)
2015 StandoutNobel
Proteomics data repositories: Providing a safe haven for your data and acting as a springboard for further research
2010
Insulin and Metabolic Stress Stimulate Multisite Serine/Threonine Phosphorylation of Insulin Receptor Substrate 1 and Inhibit Tyrosine Phosphorylation
2014
Raptor/mTORC1 loss in adipocytes causes progressive lipodystrophy and fatty liver disease
2016
The Insulin Receptor: Both a Prototypical and Atypical Receptor Tyrosine Kinase
2013
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Making new contacts: the mTOR network in metabolism and signalling crosstalk
2014
mTOR Signaling in Growth Control and Disease
2012 Standout
A view on drug resistance in cancer
2019 StandoutNature
UniProt Knowledgebase: a hub of integrated protein data
2011
An extensive library of surrogate peptides for all human proteins
2015
Serine 302 Phosphorylation of Mouse Insulin Receptor Substrate 1 (IRS1) Is Dispensable for Normal Insulin Signaling and Feedback Regulation by Hepatic S6 Kinase
2016
Hominoid-Specific De Novo Protein-Coding Genes Originating from Long Non-Coding RNAs
2012
Improvements in the protein identifier cross-reference service
2012
MARCH1 regulates insulin sensitivity by controlling cell surface insulin receptor levels
2016
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
MOPED: Model Organism Protein Expression Database
2011
Hallmarks of aging: An expanding universe
2023 Standout
Pfam: the protein families database
2013 Standout
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
2010
Deep Proteome Coverage Based on Ribosome Profiling Aids Mass Spectrometry-based Protein and Peptide Discovery and Provides Evidence of Alternative Translation Products and Near-cognate Translation Initiation Events*
2013
Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
2012
Regulation of insulin sensitivity by serine/threonine phosphorylation of insulin receptor substrate proteins IRS1 and IRS2
2012
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
The TSC-mTOR pathway regulates macrophage polarization
2013
Metabolic maintenance of cell asymmetry following division in activated T lymphocytes
2016 Nature
Asymmetric and non-uniform evolution of recently duplicated human genes
2010
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
The Ontology Lookup Service: bigger and better
2010
mTOR at the nexus of nutrition, growth, ageing and disease
2020 Standout
Systems biology of innate immunity
2008
Biological Functions of Autophagy Genes: A Disease Perspective
2019 Standout
Decoding ALS: from genes to mechanism
2016 StandoutNature
Feedback Suppression of PI3Kα Signaling in PTEN-Mutated Tumors Is Relieved by Selective Inhibition of PI3Kβ
2014
mTOR Signaling in Growth, Metabolism, and Disease
2017 Standout
Rapalogs and mTOR inhibitors as anti-aging therapeutics
2013
A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas
2011
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
2009
The BioSample Database (BioSD) at the European Bioinformatics Institute
2011
Insulin Receptor Signaling in Normal and Insulin-Resistant States
2014
Biochemical and cellular properties of insulin receptor signalling
2017
A transposase strategy for creating libraries of circularly permuted proteins
2012
Proteomics: a pragmatic perspective
2010
Lymphangioleiomyomatosis — a wolf in sheep’s clothing
2012
Mechanisms of mTORC1 activation by RHEB and inhibition by PRAS40
2017 Nature
Mass-spectrometric exploration of proteome structure and function
2016 Nature
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments
2014
mTORC1 Promotes Metabolic Reprogramming by the Suppression of GSK3-Dependent Foxk1 Phosphorylation
2018
2016 update of the PRIDE database and its related tools
2015 Standout
Metabolic Competition in the Tumor Microenvironment Is a Driver of Cancer Progression
2015 Standout
Emerging Role of mTOR in the Response to Cancer Therapeutics
2016
TOR Signaling and Rapamycin Influence Longevity by Regulating SKN-1/Nrf and DAF-16/FoxO
2012
mTOR Signaling in Epilepsy: Insights from Malformations of Cortical Development
2015
Multilayered Genetic and Omics Dissection of Mitochondrial Activity in a Mouse Reference Population
2014
A posteriori quality control for the curation and reuse of public proteomics data
2011
Robust phosphoproteome enrichment using monodisperse microsphere–based immobilized titanium (IV) ion affinity chromatography
2013
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
2015 Standout
Understanding the Intersections between Metabolism and Cancer Biology
2017 Standout
mTOR inhibits autophagy by controlling ULK1 ubiquitylation, self-association and function through AMBRA1 and TRAF6
2013
Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
2009 Nature
AKT/PKB Signaling: Navigating the Network
2017 Standout
Dual Specificity Kinase DYRK3 Couples Stress Granule Condensation/Dissolution to mTORC1 Signaling
2013
Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB “complete proteome” sets
2011
The functions and regulation of the PTEN tumour suppressor
2012 Standout
Published and Perished? The Influence of the Searched Protein Database on the Long-Term Storage of Proteomics Data
2011
PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life
2012
The Hallmarks of Aging
2013 Standout
BioMart: a data federation framework for large collaborative projects
2011
The PI3K Pathway in Human Disease
2017 Standout
mTOR kinase structure, mechanism and regulation
2013 Nature
Perspectives of targeted mass spectrometry for protein biomarker verification
2009
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
2013 Nature
The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
2012
Regulation of mTORC1 and its impact on gene expression at a glance
2013
Regulation of mTORC1 by amino acids
2014
Recent developments in public proteomic MS repositories and pipelines
2009
Global quantification of mammalian gene expression control
2011 StandoutNature
Rapamycin passes the torch: a new generation of mTOR inhibitors
2011
Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response
2017
mTORC1 phosphorylates LARP6 to stimulate type I collagen expression
2017
Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization
2015 Standout
Phytozome: a comparative platform for green plant genomics
2011 Standout
A Positive Feedback Loop between Akt and mTORC2 via SIN1 Phosphorylation
2015
Feedback and redundancy in receptor tyrosine kinase signaling: relevance to cancer therapies
2014
Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry
2013
CrossTalk opposing view: Intramyocellular ceramide accumulation does not modulate insulin resistance
2016
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
MRMaid 2.0: Mining PRIDE for Evidence-Based SRM Transitions
2012
Mechanisms of Insulin Action and Insulin Resistance
2018 Standout
A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB
2012 Standout
Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses
2011 StandoutNobel
The Transcription Factor TFEB Links mTORC1 Signaling to Transcriptional Control of Lysosome Homeostasis
2012
Regulation of PIK3C3/VPS34 complexes by MTOR in nutrient stress-induced autophagy
2013
Cell Biology of theCaenorhabditis elegansNucleus
2017
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
2012
Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
2014
mTORC1 Phosphorylation Sites Encode Their Sensitivity to Starvation and Rapamycin
2013
Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein‐Profiling Technologies
2013
The Caenorhabditis elegans ARIP-4 DNA helicase couples mitochondrial surveillance to immune, detoxification, and antiviral pathways
2022 StandoutNobel
General approach to reversing ketol-acid reductoisomerase cofactor dependence from NADPH to NADH
2013 StandoutNobel
Spermidine in health and disease
2018 StandoutScience
Context-Specific Function of S6K2 in Th Cell Differentiation
2016
pVHL suppresses kinase activity of Akt in a proline-hydroxylation–dependent manner
2016 StandoutScienceNobel
Stimulation of de Novo Pyrimidine Synthesis by Growth Signaling Through mTOR and S6K1
2013 Science
Metabolic reprogramming and cancer progression
2020 StandoutScience
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations
2011
Applications of targeted proteomics in systems biology and translational medicine
2015
Signaling by the Phosphoinositide 3-Kinase Family in Immune Cells
2013
mTOR inhibition activates overall protein degradation by the ubiquitin proteasome system as well as by autophagy
2015
Bioorthogonal Labeling of Human Prostate Cancer Tissue Slice Cultures for Glycoproteomics
2017 StandoutNobel
AMPK directly activates mTORC2 to promote cell survival during acute energetic stress
2019
Upregulation of the Phthiocerol Dimycocerosate Biosynthetic Pathway by Rifampin-Resistant,rpoBMutant Mycobacterium tuberculosis
2012 StandoutNobel
Regulation of insulin and type 1 insulin‐like growth factor signaling and action by the G rb10/14 and SH 2B 1/B 2 adaptor proteins
2012
mTOR: a pharmacologic target for autophagy regulation
2015 Standout
The Utilization of Extracellular Proteins as Nutrients Is Suppressed by mTORC1
2015
The physiology of plant responses to drought
2020 StandoutScience
Quantitative Phosphoproteomics Reveal mTORC1 Activates de Novo Pyrimidine Synthesis
2013 Science
Molecular Origin of Blood‐Based Infrared Spectroscopic Fingerprints**
2021 StandoutNobel
jmzReader: A Java parser library to process and visualize multiple text and XML‐based mass spectrometry data formats
2012
Regulation and function of ribosomal protein S6 kinase (S6K) within mTOR signalling networks
2011
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
2008
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Chemical Glycoproteomics
2016 StandoutNobel
Works of Jonathan Rameseder being referenced
Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring
2008
Quantitative Phospho-proteomics to Investigate the Polo-like Kinase 1-Dependent Phospho-proteome
2011
A guide to the Proteomics Identifications Database proteomics data repository
2009
The Proteomics Identifications database: 2010 update
2009
The mTOR-Regulated Phosphoproteome Reveals a Mechanism of mTORC1-Mediated Inhibition of Growth Factor Signaling
2011 Science