Citation Impact
Citing Papers
The biomass distribution on Earth
2018 Standout
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
2013 Standout
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
2009 Standout
A Robust Species Tree for the Alphaproteobacteria
2007
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
A core gut microbiome in obese and lean twins
2008 StandoutNature
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
2011
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
2006 Nature
Microbial structuring of marine ecosystems
2007
Persister cells, dormancy and infectious disease
2006
Human Genetics Shape the Gut Microbiome
2014 Standout
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
The dynamic genetic repertoire of microbial communities
2008
Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis
2014 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Get the most out of your metagenome: computational analysis of environmental sequence data
2007
Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations
2012
Proteorhodopsins: an array of physiological roles?
2008
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
CD-HIT: accelerated for clustering the next-generation sequencing data
2012 Standout
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Human nutrition, the gut microbiome and the immune system
2011 StandoutNature
Metagenomic biomarker discovery and explanation
2011 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
The Science of Antibiotic Discovery
2020 Standout
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
Functional interactions between the gut microbiota and host metabolism
2012 StandoutNature
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
A Chromatin-Mediated Reversible Drug-Tolerant State in Cancer Cell Subpopulations
2010 Standout
Microbial interactions: from networks to models
2012 Standout
Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula
2015
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
The Human Microbiome Project
2007 StandoutNature
A global network of coexisting microbes from environmental and whole-genome sequence data
2010
Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
2008 Standout
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
2008
Genomic and functional adaptation in surface ocean planktonic prokaryotes
2010 Nature
NCBI prokaryotic genome annotation pipeline
2016 Standout
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
2015
Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits
2014 Standout
Optogenetics in Neural Systems
2011 Standout
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
2008 StandoutNature
The microbial nitrogen-cycling network
2018 Standout
Lineages of Acidophilic Archaea Revealed by Community Genomic Analysis
2006 Science
Gut Microbiota in Health and Disease
2010 Standout
Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)
2011
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
2012 Standout
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
2006
CD-HIT Suite: a web server for clustering and comparing biological sequences
2010 Standout
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
2012
Evidence of ancient genome reduction in red algae (Rhodophyta)
2015
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
2013
Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade
2012
CRISPR-CasΦ from huge phages is a hypercompact genome editor
2020 StandoutScienceNobel
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
2013
Partial Genome Assembly for a Candidate Division OP11 Single Cell from an Anoxic Spring (Zodletone Spring, Oklahoma)
2011
Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
2007
Quantitative phylogenetic assessment of microbial communities indiverse environments
2009
Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41
2008 Standout
Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
2008
Identification of simple arylfluorosulfates as potent agents against resistant bacteria
2021 StandoutNobel
Life under extreme energy limitation: a synthesis of laboratory- and field-based investigations
2015
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
2015 Standout
Host-Gut Microbiota Metabolic Interactions
2012 StandoutScience
Resistance, resilience, and redundancy in microbial communities
2008 Standout
The Microbial Engines That Drive Earth's Biogeochemical Cycles
2008 StandoutScience
Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris
2013 Standout
Microbiota regulates immune defense against respiratory tract influenza A virus infection
2011 Standout
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea
2011
Streamlining and Simplification of Microbial Genome Architecture
2006
Growing Unculturable Bacteria
2012
Solving the Problem: Genome Annotation Standards before the Data Deluge
2011
SAR11 bacteria linked to ocean anoxia and nitrogen loss
2016 Nature
Works of Jonathan Eads being referenced
Genome Streamlining in a Cosmopolitan Oceanic Bacterium
2005 Science
Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study
2005