Standout Papers
Citation Impact
Citing Papers
Selective targeting of engineered T cells using orthogonal IL-2 cytokine-receptor complexes
2018 StandoutScienceNobel
Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study
2006
Nature of the protein universe
2009 StandoutNobel
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Protein homology detection by HMM–HMM comparison
2004 Standout
Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59
2012 StandoutNobel
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Consistent blind protein structure generation from NMR chemical shift data
2008 StandoutNobel
Voltage sensor conformations in the open and closed states in rosetta structural models of K + channels
2006 StandoutNobel
Improved protein structure prediction using predicted interresidue orientations
2020 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Computational Thermostabilization of an Enzyme
2005 StandoutScienceNobel
Emergence of symmetry in homooligomeric biological assemblies
2008 StandoutNobel
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
2013 StandoutNobel
Automated de novo prediction of native-like RNA tertiary structures
2007 StandoutNobel
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
Protein Structure Prediction Using Rosetta
2004 StandoutNobel
Two Regions in the N-terminal Domain of Ionotropic Glutamate Receptor 3 Form the Subunit Oligomerization Interfaces That Control Subtype-specific Receptor Assembly
2005
dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs
2020
Resolution‐adapted recombination of structural features significantly improves sampling in restraint‐guided structure calculation
2011 StandoutNobel
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
Channel opening and gating mechanism in AMPA-subtype glutamate receptors
2017 StandoutNatureNobel
Automated server predictions in CASP7
2007
Automated prediction of CASP-5 structures using the Robetta server
2003 StandoutNobel
JPred4: a protein secondary structure prediction server
2015
Refinement of Protein Structures by Iterative Comparative Modeling and CryoEM Density Fitting
2006
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Multipass membrane protein structure prediction using Rosetta
2005 StandoutNobel
Accurate design of co-assembling multi-component protein nanomaterials
2014 StandoutNatureNobel
FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function
2007
Common method biases in behavioral research: A critical review of the literature and recommended remedies.
2003 Standout
Principles for designing ideal protein structures
2012 StandoutNatureNobel
A Computationally Designed Inhibitor of an Epstein-Barr Viral Bcl-2 Protein Induces Apoptosis in Infected Cells
2014 StandoutNobel
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
Structural and energetic basis of folded-protein transport by the FimD usher
2013 StandoutNatureNobel
FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6
2005
Protein structure prediction by all-atom free-energy refinement
2007
Predicting protein structures with a multiplayer online game
2010 StandoutNatureNobel
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
2011 StandoutNatureNobel
Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller
2003
LiveBench-6: Large-scale automated evaluation of protein structure prediction servers
2003
Protein–Protein Docking with Backbone Flexibility
2007 StandoutNobel
Computational redesign of endonuclease DNA binding and cleavage specificity
2006 StandoutNatureNobel
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
Protein structure prediction and analysis using the Robetta server
2004 StandoutNobel
A synthetic homing endonuclease-based gene drive system in the human malaria mosquito
2011 StandoutNatureNobel
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
3D-Jury: a simple approach to improve protein structure predictions
2003
Mechanism of folding chamber closure in a group II chaperonin
2010 StandoutNatureNobel
Improved beta‐protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation
2006 StandoutNobel
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Pcons5: combining consensus, structural evaluation and fold recognition scores
2005
A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction
2005
De novo protein design by deep network hallucination
2021 StandoutNatureNobel
De Novo Backbone Trace of GroEL from Single Particle Electron Cryomicroscopy
2008
Free modeling with Rosetta in CASP6
2005 StandoutNobel
Toward high-resolution prediction and design of transmembrane helical protein structures
2007 StandoutNobel
Assessment of progress over the CASP experiments
2003
Prediction of the structure of symmetrical protein assemblies
2007 StandoutNobel
High thermodynamic stability of parametrically designed helical bundles
2014 StandoutScienceNobel
Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus
2017 StandoutNobel
Algorithm discovery by protein folding game players
2011 StandoutNobel
Macromolecular Modeling with Rosetta
2008 StandoutNobel
Progress in Modeling of Protein Structures and Interactions
2005 StandoutScienceNobel
Relationships between bases of power and work reactions: The mediational role of procedural justice
1998
Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin
2011 StandoutScienceNobel
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
2012 StandoutNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Elicitation of structure-specific antibodies by epitope scaffolds
2010 StandoutNobel
Comparative Protein Structure Modeling Using Modeller
2006 Standout
Structural basis for gating charge movement in the voltage sensor of a sodium channel
2011 StandoutNobel
Works of Jonathan D. Casper being referenced
Combining local-structure, fold-recognition, and new fold methods for protein structure prediction
2003
What is the value added by human intervention in protein structure prediction?
2001
Maintaining Allegiance toward Political Authorities: The Role of Prior Attitudes and the Use of Fair Procedures
1989
UCSC Data Integrator and Variant Annotation Integrator
2016