Jonathan Colombet

Metagenomic Characterization of Airborne Viral DNA Diversity in the Near-Surface Atmosphere

Hypothesis: RNA and DNA Viral Sequence Integration into the Mammalian Host Genome Supports Long-Term B Cell and T Cell Adaptive Immunity

Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins

Embracing the unknown: disentangling the complexities of the soil microbiome

Exploring the viral world through metagenomics

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Regulation of priming effect by soil organic matter stability over a broad geographic scale

Unveiling fungal zooflagellates as members of freshwater picoeukaryotes: evidence from a molecular diversity study in a deep meromictic lake

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

The common bloom-forming cyanobacterium Microcystis is prone to a wide array of microbial antagonists

Quantitative Viral Community DNA Analysis Reveals the Dominance of Single-Stranded DNA Viruses in Offshore Upper Bathyal Sediment from Tohoku, Japan

Antibiotic resistance in the environment

First detection of SARS-CoV-2 in untreated wastewaters in Italy

Proteobacteria: microbial signature of dysbiosis in gut microbiota

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Cyanobacterial blooms

SARS-CoV-2 in wastewater: State of the knowledge and research needs

COVID-19 and Living space challenge. Well-being and Public Health recommendations for a healthy, safe, and sustainable housing.

Single‐stranded DNA viruses employ a variety of mechanisms for integration into host genomes

Universality of priming effect: An analysis using thirty five soils with contrasted properties sampled from five continents

Estimates of viral abundance in soils are strongly influenced by extraction and enumeration methods

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes

Population-level surveillance of antibiotic resistance in Escherichia coli through sewage analysis

Microbial players involved in the decline of filamentous and colonial cyanobacterial blooms with a focus on fungal parasitism

TNT version 1.5, including a full implementation of phylogenetic morphometrics

Soil carbon dioxide emissions controlled by an extracellular oxidative metabolism identifiable by its isotope signature

An unknown oxidative metabolism substantially contributes to soil CO ₂ emissions

Fungal Parasitism: Life Cycle, Dynamics and Impact on Cyanobacterial Blooms

Diversity of virus–host systems in hypersaline Lake Retba, Senegal

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics

Virioplankton ‘pegylation’: Use of PEG (polyethylene glycol) to concentrate and purify viruses in pelagic ecosystems

Linking Host Prokaryotic Physiology to Viral Lifestyle Dynamics in a Temperate Freshwater Lake (Lake Pavin, France)

Analysis of metagenomic data reveals common features of halophilic viral communities across continents

Depth-Related Gradients of Viral Activity in Lake Pavin

Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015