Citation Impact
Citing Papers
A survey of best practices for RNA-seq data analysis
2016 Standout
DNA methylation profiling of medulloblastoma allows robust subclassification and improved outcome prediction using formalin-fixed biopsies
2013
Wnt/β-catenin signalling: function, biological mechanisms, and therapeutic opportunities
2022 Standout
NGSQC: cross-platform quality analysis pipeline for deep sequencing data
2010
Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions
2016
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
Mammary stem cells have myoepithelial cell properties
2014
Base-resolution models of transcription-factor binding reveal soft motif syntax
2021
RIC-seq for global in situ profiling of RNA–RNA spatial interactions
2020 Nature
Targeting Ferroptosis to Iron Out Cancer
2019 Standout
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
2018
CRISPR Immunological Memory Requires a Host Factor for Specificity
2016 StandoutNobel
Macrophages in immunoregulation and therapeutics
2023 Standout
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12
2011
Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
2018
Cancer stem cells revisited
2017 Standout
Cellular senescence in ageing: from mechanisms to therapeutic opportunities
2020 Standout
NOTCH1 mediates a switch between two distinct secretomes during senescence
2016
Idiopathic pulmonary fibrosis
2017 Standout
Functional mapping and annotation of genetic associations with FUMA
2017 Standout
Oxidative Stress in Cancer
2020 Standout
Hallmarks of Cellular Senescence
2018 Standout
Metabolic functions of the tumor suppressor p53: Implications in normal physiology, metabolic disorders, and cancer
2019
Interpreting neural networks for biological sequences by learning stochastic masks
2022 StandoutNobel
Comprehensive Integration of Single-Cell Data
2019 Standout
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
The role of transcription in shaping the spatial organization of the genome
2019
SOCS1 regulates senescence and ferroptosis by modulating the expression of p53 target genes
2017
GeneHancer: genome-wide integration of enhancers and target genes in GeneCards
2017
Revealing a human p53 universe
2018
Works of Jonathan Cairns being referenced
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53
2015
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
2016
Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
2017
RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus
2019
Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition
2018
BayesPeak—an R package for analysing ChIP-seq data
2011
BASH: a tool for managing BeadArray spatial artefacts
2008