Citation Impact
Citing Papers
The biomass distribution on Earth
2018 Standout
CRISPR Immunity Drives Rapid Phage Genome Evolution in Streptococcus thermophilus
2015
Population Genomics of Early Events in the Ecological Differentiation of Bacteria
2012 Science
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
2015 Standout
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
QUAST: quality assessment tool for genome assemblies
2013 Standout
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
2020 Standout
In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids
2012 Science
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter
2015
Functionally relevant diversity of closely related Nitrospira in activated sludge
2014
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea
2013
Kraken: ultrafast metagenomic sequence classification using exact alignments
2014 Standout
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Community-wide analysis of microbial genome sequence signatures
2009
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Laboratory procedures to generate viral metagenomes
2009
Marine microbial community dynamics and their ecological interpretation
2015
The re-emergence of natural products for drug discovery in the genomics era
2015 Standout
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
2009 Standout
Spacer Acquisition Rates Determine the Immunological Diversity of the Type II CRISPR-Cas Immune Response
2019 StandoutNobel
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
2011
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
Gut microbiota functions: metabolism of nutrients and other food components
2017 Standout
Low Species Barriers in Halophilic Archaea and the Formation of Recombinant Hybrids
2012
Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?
2010
Microbial diversity and the genetic nature of microbial species
2008
The dynamic genetic repertoire of microbial communities
2008
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
Oral multispecies biofilm development and the key role of cell–cell distance
2010 Standout
Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil
2012
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
2019 StandoutNobel
Prochlorococcus: the structure and function of collective diversity
2014
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Metabolic pathways for the whole community
2014
Mechanisms of gene flow in archaea
2017
Binning metagenomic contigs by coverage and composition
2014 Standout
Bacterial species may exist, metagenomics reveal
2011
Metagenomic and Metabolic Profiling of Nonlithifying and Lithifying Stromatolitic Mats of Highborne Cay, The Bahamas
2012
The climate hazards infrared precipitation with stations—a new environmental record for monitoring extremes
2015 Standout
Meta'omic Analytic Techniques for Studying the Intestinal Microbiome
2014
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
Prokaryotic taxonomy in the sequencing era – the polyphasic approach revisited
2011
Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage
2013 StandoutNature
A thermostable Cas9 with increased lifetime in human plasma
2017 StandoutNobel
Gut microbiota, metabolites and host immunity
2016 Standout
Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering
2016 StandoutNobel
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
Metatranscriptomic Analysis of Sulfur Oxidation Genes in the Endosymbiont of Solemya Velum
2011
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Adaptation in CRISPR-Cas Systems
2016 StandoutNobel
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
In situ imaging reveals the biomass of giant protists in the global ocean
2016 Nature
Environmental effects of the Deepwater Horizon oil spill: A review
2016 Standout
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
2018 Standout
The microbial nitrogen-cycling network
2018 Standout
Cyanobacterial blooms
2018 Standout
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
2013
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
2012 Standout
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
2012 Standout
Computational meta'omics for microbial community studies
2013
Soil enzymes in a changing environment: Current knowledge and future directions
2012 Standout
Oil Spill Dispersants: Boon or Bane?
2015
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
2014 Standout
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
2014
A Bioinformatician's Guide to Metagenomics
2008
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
2011
Bambus 2: scaffolding metagenomes
2011
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
2012 Standout
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
2013
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
2015 Standout
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
2017 Standout
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
2015
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
2015 Standout
Past and future rainfall in the Horn of Africa
2015
Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics
2018
Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea
2012
A comparison of homologous recombination rates in bacteria and archaea
2008
Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow
2016
SAR11 bacteria linked to ocean anoxia and nitrogen loss
2016 Nature
Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter
2015
Works of John M. Eppley being referenced
Pattern and synchrony of gene expression among sympatric marine microbial populations
2013
Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean
2014
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
2014 Science
Strainer: software for analysis of population variation in community genomic datasets
2007
Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
2011
Time‐series analyses of Monterey Bay coastal microbial picoplankton using a ‘genome proxy’ microarray
2010
Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies
2016
Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
2012
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
2015
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
2010
Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma
2007
Microbial community transcriptional networks are conserved in three domains at ocean basin scales
2015