Citation Impact

Citing Papers

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
2009 StandoutScience
P-Body Formation Is a Consequence, Not the Cause, of RNA-Mediated Gene Silencing
2007
Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation
2014 StandoutScienceNobel
Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking
2007 StandoutNobel
Cytoplasmic Decay of Intergenic Transcripts in Saccharomyces cerevisiae
2006
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
A Novel Plasmid-Based Microarray Screen Identifies Suppressors of rrp6 Δ in Saccharomyces cerevisiae
2006 StandoutNobel
Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15
2017 Science
The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana
2014
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
2021 Standout
Discovery and engineering of enhanced SUMO protease enzymes
2018 StandoutNobel
Transcriptome and proteome quantification of a tumor model provides novel insights into post‐transcriptional gene regulation
2013
A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28–let-7 pathway
2013 Nature
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Structural basis for DNA duplex separation by a superfamily-2 helicase
2007
Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome
2005
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
2008
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence
2012 StandoutNatureNobel
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
2009 StandoutNature
An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3′-to-5′ exoRNases and RNase Y
2020 StandoutNobel
Hallmarks of aging: An expanding universe
2023 Standout
MOV10 Is a 5′ to 3′ RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3′ UTRs
2014
Use, tolerance and avoidance of amplified RNA silencing by plants
2008
Origins and Mechanisms of miRNAs and siRNAs
2009 Standout
Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
2015
5′-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay
2010
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
2008
The role of retrotransposable elements in ageing and age-associated diseases
2021 Nature
An SCN9A channelopathy causes congenital inability to experience pain
2006 StandoutNature
Rapid, Transcript-Specific Changes in Splicing in Response to Environmental Stress
2007
Early nonsense: mRNA decay solves a translational problem
2006
Decoding ALS: from genes to mechanism
2016 StandoutNature
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
The Histone Chaperone Spt6 Is Required for Activation-induced Cytidine Deaminase Target Determination through H3K4me3 Regulation
2012 StandoutNobel
Analysis of the C. elegans Argonaute Family Reveals that Distinct Argonautes Act Sequentially during RNAi
2006 StandoutNobel
Rapid tRNA Decay Can Result from Lack of Nonessential Modifications
2006
Metazoan MicroRNAs
2018 Standout
Polyadenylation-Dependent Control of Long Noncoding RNA Expression by the Poly(A)-Binding Protein Nuclear 1
2012
Elimination of large tumors in mice by mRNA-encoded bispecific antibodies
2017 StandoutNobel
TERRA biogenesis, turnover and implications for function
2010
Trans-splicing in C. elegans generates the negative RNAi regulator ERI-6/7
2008 StandoutNatureNobel
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
siRNA and miRNA processing: new functions for Cajal bodies
2008
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq
2012
Widespread changes in protein synthesis induced by microRNAs
2008 StandoutNature
Origin, Biogenesis, and Activity of Plant MicroRNAs
2009 Standout
Chapter 5 The Role of 3′–5′ Exoribonucleases in RNA Degradation
2009
A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, and N 1 -methyladenosine modification
2016
The Exosome Regulates Circadian Gene Expression in a Posttranscriptional Negative Feedback Loop
2009
Cryptic Pol II Transcripts Are Degraded by a Nuclear Quality Control Pathway Involving a New Poly(A) Polymerase
2005
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Developing genetic tools to exploit Chaetomium thermophilum for biochemical analyses of eukaryotic macromolecular assemblies
2016
Microprocessor, Setx, Xrn2, and Rrp6 Co-operate to Induce Premature Termination of Transcription by RNAPII
2012
Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs
2007
Small RNAs in transcriptional gene silencing and genome defence
2009 Nature
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway
2007 StandoutNobel
Yeast targets for mRNA methylation
2010
A triple helix stabilizes the 3′ ends of long noncoding RNAs that lack poly(A) tails
2012
DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis
2020 StandoutNatureNobel
Transcription Termination and Nuclear Degradation of Cryptic Unstable Transcripts: A Role for the Nrd1-Nab3 Pathway in Genome Surveillance
2006
Identification of a Rapid Mammalian Deadenylation-Dependent Decay Pathway and Its Inhibition by a Viral RNA Element
2006
Chemistry of Class 1 CRISPR-Cas effectors: Binding, editing, and regulation
2020 StandoutNobel
Chromatin remodeller SMARCA4 recruits topoisomerase 1 and suppresses transcription-associated genomic instability
2016 StandoutNobel
Termination of Cryptic Unstable Transcripts Is Directed by Yeast RNA-Binding Proteins Nrd1 and Nab3
2006
Promoter directionality is controlled by U1 snRNP and polyadenylation signals
2013 Nature
Toxic PR Poly-Dipeptides Encoded by the C9orf72 Repeat Expansion Target LC Domain Polymers
2016
Nucleases: diversity of structure, function and mechanism
2010
The Many Pathways of RNA Degradation
2009
Terminate and make a loop: regulation of transcriptional directionality
2014
Long Noncoding RNAs: Cellular Address Codes in Development and Disease
2013 Standout
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
2016 StandoutNatureNobel
Transcriptional noise and the fidelity of initiation by RNA polymerase II
2007
Structure of the Mammalian Ribosomal 43S Preinitiation Complex Bound to the Scanning Factor DHX29
2013 StandoutNobel
AID Targeting in Antibody Diversity
2011
Nuclear RNA surveillance inSaccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA
2006
P bodies: at the crossroads of post-transcriptional pathways
2006
In vivo 3′-to-5′ exoribonuclease targetomes of Streptococcus pyogenes
2018 StandoutNobel
New perspectives on the diversification of theRNAinterference system: insights from comparative genomics and smallRNAsequencing
2013
RNA–protein analysis using a conditional CRISPR nuclease
2013 StandoutNobel
Accumulation of the FACT complex, as well as histone H3.3, serves as a target marker for somatic hypermutation
2013 StandoutNobel
Pathogen Recognition and Inflammatory Signaling in Innate Immune Defenses
2009 Standout
Peptidic degron for IMiD-induced degradation of heterologous proteins
2019 StandoutNobel
Decrease in topoisomerase I is responsible for activation-induced cytidine deaminase (AID)-dependent somatic hypermutation
2011 StandoutNobel
Ribo-gnome: The Big World of Small RNAs
2005 Science
Mammalian DIS3L2 exoribonuclease targets the uridylated precursors of let-7 miRNAs
2013
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
Mobilization of LINE-1 retrotransposons is restricted by Tex19.1 in mouse embryonic stem cells
2017
DNA origami protection and molecular interfacing through engineered sequence-defined peptoids
2020 StandoutNobel
Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain
2006
Ribosome Biogenesis in the YeastSaccharomyces cerevisiae
2013
LINE-1 RNA causes heterochromatin erosion and is a target for amelioration of senescent phenotypes in progeroid syndromes
2022
RNA editing of hepatitis B virus transcripts by activation-induced cytidine deaminase
2013 StandoutNobel
Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells
2014
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
2006
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
2016 StandoutNobel
Nascent-Seq analysis of Drosophila cycling gene expression
2013 StandoutNobel
Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
2011
Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination
2010 StandoutNobel
Recombinant messenger RNA technology and its application in cancer immunotherapy, transcript replacement therapies, pluripotent stem cell induction, and beyond
2015
RNA Elimination Machinery Targeting Meiotic mRNAs Promotes Facultative Heterochromatin Formation
2011 Science
The selective elimination of messenger RNA underlies the mitosis-meiosis switch in fission yeast
2010
Functional requirements of AID’s higher order structures and their interaction with RNA-binding proteins
2016 StandoutNobel
Pervasive transcription constitutes a new level of eukaryotic genome regulation
2009

Works of John LaCava being referenced

LINE-1 ORF2p expression is nearly imperceptible in human cancers
2019
The Polycomb group protein CBX6 is an essential regulator of embryonic stem cell identity
2017
Rapid, optimized interactomic screening
2015
Affinity Proteomics Reveals Human Host Factors Implicated in Discrete Stages of LINE-1 Retrotransposition
2013
Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels
2012
The human cap-binding complex is functionally connected to the nuclear RNA exosome
2013
RNA-quality control by the exosome
2006
RNA Degradation by the Exosome Is Promoted by a Nuclear Polyadenylation Complex
2005
High Prevalence and Disease Correlation of Autoantibodies Against p40 Encoded by Long Interspersed Nuclear Elements in Systemic Lupus Erythematosus
2019
Affinity Proteomics to Study Endogenous Protein Complexes: Pointers, Pitfalls, Preferences and Perspectives
2015
LINE-1 protein localization and functional dynamics during the cell cycle
2018
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