Citation Impact
Citing Papers
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
2005 Standout
Rhizobium induces DNA damage in Caenorhabditis elegans intestinal cells
2019 StandoutNobel
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
The mevalonate pathway regulates microRNA activity in Caenorhabditis elegans
2012 StandoutNobel
A Gene Network Regulating Lysosomal Biogenesis and Function
2009 StandoutScience
Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy
2004 StandoutScience
Functional specialization of β-arrestin interactions revealed by proteomic analysis
2007 StandoutNobel
Defining the Epithelial Stem Cell Niche in Skin
2003 StandoutScience
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Evolution of Mammals and Their Gut Microbes
2008 StandoutScience
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Schizophrenia risk from complex variation of complement component 4
2016 StandoutNature
FunSpec: a web-based cluster interpreter for yeast
2002
Genome-wide Association of Hypoxia-inducible Factor (HIF)-1α and HIF-2α DNA Binding with Expression Profiling of Hypoxia-inducible Transcripts
2009 StandoutNobel
FACT – a framework for the functional interpretation of high-throughput experiments
2005
Paraneoplastic neurological degenerations: keys to tumour immunity
2004
Inflammation and metabolic disorders
2006 StandoutNature
MicroRNAs
2004 Standout
Widespread mRNA Association with Cytoskeletal Motor Proteins and Identification and Dynamics of Myosin-Associated mRNAs in S. cerevisiae
2012 StandoutNobel
Profiling Gene Expression Using Onto-Express
2002
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
2004
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
2003 Standout
GOAL: automated Gene Ontology analysis of expression profiles
2004
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
2007 StandoutNobel
The Pfam Protein Families Database
2002 Standout
Paraneoplastic Syndromes Involving the Nervous System
2003 Standout
The Zebrafish Information Network: the zebrafish model organism database
2005
c-Myc-regulated microRNAs modulate E2F1 expression
2005 StandoutNature
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
2003
Predictome: a database of putative functional links between proteins
2002
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
2005 StandoutNature
MicroRNAs: Target Recognition and Regulatory Functions
2009 Standout
A three-dimensional view of the molecular machinery of RNA interference
2008 StandoutNatureNobel
Tumor-specific killer cells in paraneoplastic cerebellar degeneration
1998
Molecular Determinants of Crosstalk between Nuclear Receptors and Toll-like Receptors
2005
The impact of microRNAs on protein output
2008 StandoutNature
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis
2006
A unique chromatin signature uncovers early developmental enhancers in humans
2010 StandoutNature
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Tumour invasion and metastasis initiated by microRNA-10b in breast cancer
2007 StandoutNature
Digitizing life at the level of the cell: high-performance laser-scanning microscopy and image analysis for in toto imaging of development
2003
WEGO: a web tool for plotting GO annotations
2006 Standout
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
2003 Standout
Proteomic, Functional, and Domain-Based Analysis of In Vivo 14-3-3 Binding Proteins Involved in Cytoskeletal Regulation and Cellular Organization
2004
Oncogenic Mutations Counteract Intrinsic Disorder in the EGFR Kinase and Promote Receptor Dimerization
2012 StandoutNobel
Ancestral polyploidy in seed plants and angiosperms
2011 StandoutNature
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life
2004 Standout
A pancreatic islet-specific microRNA regulates insulin secretion
2004 StandoutNature
The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
2003
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases
2006 StandoutNature
Dendritic spine pathology in schizophrenia
2012
Prediction of Mammalian MicroRNA Targets
2003 Standout
Revealing the world of RNA interference
2004 StandoutNatureNobel
DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis
2020 StandoutNatureNobel
Comparative assessment of large-scale data sets of protein–protein interactions
2002 StandoutNature
Identification of Mammalian microRNA Host Genes and Transcription Units
2004 Standout
g:Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments
2007
Human housekeeping genes are compact
2003
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
2010 StandoutNature
E-MSD: the European Bioinformatics Institute Macromolecular Structure Database
2003
Gene expression profiles of transcripts in amyloid precursor protein transgenic mice: up-regulation of mitochondrial metabolism and apoptotic genes is an early cellular change in Alzheimer's disease
2004
Use and misuse of the gene ontology annotations
2008
Genome-wide expression analysis using microarray identified complex signaling pathways modulated by hypoxia in nasopharyngeal carcinoma
2007
The functions of animal microRNAs
2004 StandoutNatureNobel
Human non-synonymous SNPs: server and survey
2002 Standout
A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing
2000
Babel's tower revisited: a universal resource for cross-referencing across annotation databases
2006
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Cancer Immunoediting: Integrating Immunity’s Roles in Cancer Suppression and Promotion
2011 StandoutScience
Kinase requirements in human cells: III. Altered kinase requirements inVHL−/− cancer cells detected in a pilot synthetic lethal screen
2008 StandoutNobel
Modulation of Hepatitis C Virus RNA Abundance by a Liver-Specific MicroRNA
2005 StandoutScience
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
2003
GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms
2004
Hierarchical model of gene regulation by transforming growth factor β
2003
Combining biological networks to predict genetic interactions
2004
Works of John Corradi being referenced
PROGRAM DESCRIPTION
2001
The NMDA receptor co-agonists, d-serine and glycine, regulate neuronal dendritic architecture in the somatosensory cortex
2011
The cytoplasmic Purkinje onconeural antigen cdr2 down-regulates c-Myc function: implications for neuronal and tumor cell survival
1999
A Post-Transcriptional Regulatory Mechanism Restricts Expression of the Paraneoplastic Cerebellar Degeneration Antigen cdr2 to Immune Privileged Tissues
1997
Creating the gene ontology resource: design and implementation.
2001