Citation Impact
Citing Papers
Protein homology model refinement by large-scale energy optimization
2018 StandoutNobel
Exploiting conformational dynamics to modulate the function of designed proteins
2023 StandoutNobel
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds
2020 StandoutNobel
Fast and accurate protein structure search with Foldseek
2023 Standout
2023 Standout
Assisted Evolution Enables HIV-1 to Overcome a High TRIM5α-Imposed Genetic Barrier to Rhesus Macaque Tropism
2013
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
2017 Standout
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction
2020 Standout
Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics
2018 StandoutNobel
Chemical shift-based methods in NMR structure determination
2018
Molecular Dynamics Simulation for All
2018 Standout
Modeling the human Na<sub>v</sub>1.5 sodium channel: structural and mechanistic insights of ion permeation and drug blockade
2017 StandoutNobel
SMOG 2: A Versatile Software Package for Generating Structure-Based Models
2016
Single-Particle Cryo-EM at Crystallographic Resolution
2015
Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins
2019
Intrinsically disordered proteins in cellular signalling and regulation
2014 Standout
TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action
2016 StandoutNatureNobel
Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution
2014 Nature
Enhanced sampling techniques in molecular dynamics simulations of biological systems
2014
De novo design of a non-local β-sheet protein with high stability and accuracy
2018 StandoutNobel
Identification of Interferon-Stimulated Genes with Antiretroviral Activity
2016 StandoutNobel
Specificities of secretion and uptake of exosomes and other extracellular vesicles for cell-to-cell communication
2018 Standout
Towards an efficient compression of 3D coordinates of macromolecular structures
2017
HIV-1 assembly, release and maturation
2015
The ReaxFF reactive force-field: development, applications and future directions
2016 Standout
Quantum‐mechanical condensed matter simulations with CRYSTAL
2018 Standout
Ion-dependent protein–surface interactions from intrinsic solvent response
2021 StandoutNobel
Significant Refinement of Protein Structure Models Using a Residue-Specific Force Field
2015
Sequential nested assembly at the liquid/solid interface
2017 StandoutNobel
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Cryo-EM for Small Molecules Discovery, Design, Understanding, and Application
2018
Physics-Based Potentials for the Coupling between Backbone- and Side-Chain-Local Conformational States in the United Residue (UNRES) Force Field for Protein Simulations
2015
Protein cage assembly across multiple length scales
2018
NGL viewer: web-based molecular graphics for large complexes
2018
Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering
2019 StandoutNobel
New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions
2018
Recognition of the HIV Capsid by the TRIM5α Restriction Factor Is Mediated by a Subset of Pre-Existing Conformations of the TRIM5α SPRY Domain
2014
Reconstitution of selective HIV-1 RNA packaging in vitro by membrane-bound Gag assemblies
2016 StandoutNobel
Elucidating the fundamental forces in protein crystal formation: the case of crambin
2015
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
2016 Standout
Interferon-Stimulated Gene (ISG)-Expression Screening Reveals the Specific Antibunyaviral Activity of ISG20
2018 StandoutNobel
Nonlinear machine learning in simulations of soft and biological materials
2017
Cryo-Electron Tomography: The Resolution Revolution and a Surge of In Situ Virological Discoveries
2023
Topological Dynamics in Supramolecular Rotors
2014
Disentangling Rotational Dynamics and Ordering Transitions in a System of Self-Organizing Protein Nanorods via Rotationally Invariant Latent Representations
2021 StandoutNobel
Avoiding False Positive Conclusions in Molecular Simulation: The Importance of Replicas
2018
Host and Viral Determinants of Mx2 Antiretroviral Activity
2014
Quantitative Characterization of Domain Motions in Molecular Machines
2017 StandoutNobel
Large-Scale Computations in Chemistry: A Bird’s Eye View of a Vibrant Field
2015
Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations
2019 StandoutNobel
Iterative Molecular Dynamics–Rosetta Membrane Protein Structure Refinement Guided by Cryo-EM Densities
2017
Works of Jiying Ning being referenced
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics
2013 Nature
CryoET structures of immature HIV Gag reveal six-helix bundle
2021
Structure of native HIV-1 cores and their interactions with IP6 and CypA
2021
Structural insight into HIV-1 capsid recognition by rhesus TRIM5α
2012
CryoEM Structure Refinement by Integrating NMR Chemical Shifts with Molecular Dynamics Simulations
2017