Citation Impact
Citing Papers
2016 Standout
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
2015 Standout
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Roary: rapid large-scale prokaryote pan genome analysis
2015 Standout
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
2024 Standout
Newly isolated Nodularia phage influences cyanobacterial community dynamics
2016
The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans
2019 StandoutNobel
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
Global biogeography of SAR11 marine bacteria
2012
Modulation of gut microbiota by berberine and metformin during the treatment of high-fat diet-induced obesity in rats
2015 Standout
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
2010
From genomics to metagenomics
2012
The re-emergence of natural products for drug discovery in the genomics era
2015 Standout
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
2016 Standout
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
SignalP 5.0 improves signal peptide predictions using deep neural networks
2019 Standout
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics
2017 Standout
PHASTER: a better, faster version of the PHAST phage search tool
2016 Standout
Analysis of plant microbe interactions in the era of next generation sequencing technologies
2014
Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil
2012
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
CD-HIT: accelerated for clustering the next-generation sequencing data
2012 Standout
High throughput sequencing methods and analysis for microbiome research
2013
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
2012 Standout
Applying meta-pathway analyses through metagenomics to identify the functional properties of the major bacterial communities of a single spontaneous cocoa bean fermentation process sample
2015
Meta'omic Analytic Techniques for Studying the Intestinal Microbiome
2014
Experimental and analytical tools for studying the human microbiome
2011
Gut microbiota, metabolites and host immunity
2016 Standout
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
2014 Standout
Proteobacteria: microbial signature of dysbiosis in gut microbiota
2015 Standout
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
CasX enzymes comprise a distinct family of RNA-guided genome editors
2019 StandoutNatureNobel
Going viral: next-generation sequencing applied to phage populations in the human gut
2012
amoA ‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
2011
Topographic diversity of fungal and bacterial communities in human skin
2013 StandoutNature
Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
2014
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
2017 Standout
Ribosomal Database Project: data and tools for high throughput rRNA analysis
2013 Standout
Environmental effects of the Deepwater Horizon oil spill: A review
2016 Standout
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
2011
Cyanobacterial blooms
2018 Standout
The human microbiome: at the interface of health and disease
2012 Standout
SignalP 6.0 predicts all five types of signal peptides using protein language models
2022 Standout
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
2019 Standout
Soil enzymes in a changing environment: Current knowledge and future directions
2012 Standout
Classification and quantification of bacteriophage taxa in human gut metagenomes
2014
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
2015 Standout
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
2021 Standout
2013
Factors influencing quality variation in cocoa (Theobroma cacao) bean flavour profile — A review
2016 Standout
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
2019 Standout
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
The ecology of the microbiome: Networks, competition, and stability
2015 StandoutScience
A general species delimitation method with applications to phylogenetic placements
2013 Standout
Metabolomic Profiling and Genomic Study of a Marine Sponge-Associated Streptomyces sp.
2014
Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
2014
Works of Jiefu Chen being referenced
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
2010