Standout Papers
Citation Impact
Citing Papers
The Sequence Alignment/Map format and SAMtools
2009 Standout
Sequencing and Analysis of Neanderthal Genomic DNA
2006 StandoutScienceNobel
Denisovan ancestry and population history of early East Asians
2020 StandoutScienceNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
2008 StandoutScience
Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe
2012 Science
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
2014 StandoutNatureNobel
Rapid and accurate pyrosequencing of angiosperm plastid genomes.
2006
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave
2021 StandoutNatureNobel
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
2010
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Molecular breeding of polymerases for amplification of ancient DNA
2007 StandoutNobel
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
2014 Standout
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
2011 Standout
Highly Efficient Near‐Infrared Organic Light‐Emitting Diode Based on a Butterfly‐Shaped Donor–Acceptor Chromophore with Strong Solid‐State Fluorescence and a Large Proportion of Radiative Excitons
2014
Learning about human population history from ancient and modern genomes
2011
A Primer on Metagenomics
2010
Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions
2007
True single-molecule DNA sequencing of a pleistocene horse bone
2011
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
2009
A red-emissive aminobenzopyrano-xanthene dye: elucidation of fluorescence emission mechanisms in solution and in the aggregate state
2012
A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia
2010 StandoutNobel
2,5‐Difluorenyl‐Substituted Siloles for the Fabrication of High‐Performance Yellow Organic Light‐Emitting Diodes
2014
Determinants of nucleosome organization in primary human cells
2011 NatureNobel
The Neandertal genome and ancient DNA authenticity
2009 StandoutNobel
Control of NF- B-dependent Transcriptional Responses by Chromatin Organization
2009
A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling
2009
Parallel tagged sequencing on the 454 platform
2008
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
2010 StandoutNatureNobel
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition
2009
Direct multiplex sequencing (DMPS)—a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA
2009
Identification of ancient remains through genomic sequencing
2008
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Metagenomic biomarker discovery and explanation
2011 Standout
Metagenomics: Facts and Artifacts, and Computational Challenges
2010
Neanderthals in central Asia and Siberia
2007 StandoutNatureNobel
Fragmentation of Contaminant and Endogenous DNA in Ancient Samples Determined by Shotgun Sequencing; Prospects for Human Palaeogenomics
2011
New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
2009
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
2009
Complete Mitochondrial Genome Sequence of the Tyrolean Iceman
2008
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
2006
Pioneer transcription factors: establishing competence for gene expression
2011
More on Contamination: The Use of Asymmetric Molecular Behavior to Identify Authentic Ancient Human DNA
2007
Ancient DNA extraction from bones and teeth
2007 Standout
RazerS—fast read mapping with sensitivity control
2009
From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing
2007 StandoutNobel
Suppression of inflammation by a synthetic histone mimic
2010 StandoutNatureNobel
Multiplex amplification of ancient DNA
2006
An early modern human from Romania with a recent Neanderthal ancestor
2015 StandoutNatureNobel
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
2007 Standout
Hexaphenylbenzene‐Based, π‐Conjugated Snowflake‐Shaped Luminophores: Tunable Aggregation‐Induced Emission Effect and Piezofluorochromism
2015
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
2016 StandoutNatureNobel
Analysis of High-Throughput Ancient DNA Sequencing Data
2011
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
2009 StandoutNobel
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
2012
Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
2008 Standout
Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
2015
The Human Condition—A Molecular Approach
2014 StandoutNobel
Enhancer function: new insights into the regulation of tissue-specific gene expression
2011
Possible Ancestral Structure in Human Populations
2006
Analysis of one million base pairs of Neanderthal DNA
2006 StandoutNatureNobel
Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear
2010
Photothermal therapy and photoacoustic imaging via nanotheranostics in fighting cancer
2018 Standout
Nuclear Gene Indicates Coat-Color Polymorphism in Mammoths
2006 Science
Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet
2008
The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
2012
Archaeological collagen: Why worry about collagen diagenesis?
2009
DNA analysis of an early modern human from Tianyuan Cave, China
2013 StandoutNobel
Aggregation‐Induced Emission: The Whole Is More Brilliant than the Parts
2014 Standout
Solvatochromic AIE luminogens as supersensitive water detectors in organic solvents and highly efficient cyanide chemosensors in water
2014
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
2006 StandoutNobel
Bioinformatics software for biologists in the genomics era
2007
Tetraphenylethene: a versatile AIE building block for the construction of efficient luminescent materials for organic light-emitting diodes
2012
METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics
2010
Comparison and Optimization of Ancient DNA Extraction
2007
How a protein searches for its site on DNA: the mechanism of facilitated diffusion
2009
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
2014 StandoutNobel
Patterns of damage in genomic DNA sequences from a Neandertal
2007 StandoutNobel
Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
2011
Succession of microbial consortia in the developing infant gut microbiome
2010 Standout
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
A new model for ancient DNA decay based on paleogenomic meta-analysis
2017
Aggregation-Induced Emission: Together We Shine, United We Soar!
2015 Standout
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
A Bioinformatician's Guide to Metagenomics
2008
Effects of Substitution with Donor–Acceptor Groups on the Properties of Tetraphenylethene Trimer: Aggregation-Induced Emission, Solvatochromism, and Mechanochromism
2013
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
Fast and accurate short read alignment with Burrows–Wheeler transform
2009 Standout
Comparison of multiple metagenomes using phylogenetic networks based on ecological indices
2010
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
Visual and statistical comparison of metagenomes
2009
Next-Generation DNA Sequencing Methods
2008
The makers of the Protoaurignacian and implications for Neandertal extinction
2015 StandoutScienceNobel
Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne
2016 StandoutNobel
New Tricks with Old Bones
2008 Science
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
2010 StandoutScienceNobel
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Targeted Bioimaging and Photodynamic Therapy of Cancer Cells with an Activatable Red Fluorescent Bioprobe
2014
Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes
2009 StandoutScienceNobel
Salt-Responsive Self-Assembly of Luminescent Hydrogel with Intrinsic Gelation-Enhanced Emission
2013
Works of Ji Qi being referenced
Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA
2005 Science
Light-driven transformable optical agent with adaptive functions for boosting cancer surgery outcomes
2018
Nucleosome organization in the Drosophila genome
2008 Nature
MEGAN analysis of metagenomic data
2007 Standout
Highly Stable Organic Small Molecular Nanoparticles as an Advanced and Biocompatible Phototheranostic Agent of Tumor in Living Mice
2017
Efficient Non-doped Near Infrared Organic Light-Emitting Devices Based on Fluorophores with Aggregation-Induced Emission Enhancement
2012