Citation Impact
Citing Papers
SWISS-PROT: Connecting Biomolecular Knowledge Via a Protein Database
2001
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Comprehensive computational design of ordered peptide macrocycles
2017 StandoutScienceNobel
Engineered Knottin Peptides: A New Class of Agents for Imaging Integrin Expression in Living Subjects
2009
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
2013 StandoutNobel
Aphids acquired symbiotic genes via lateral gene transfer
2009
High throughput screening identifies disulfide isomerase DsbC as a very efficient partner for recombinant expression of small disulfide-rich proteins in E. coli
2013
Combinatorial Optimization of Cystine-Knot Peptides towards High-Affinity Inhibitors of Human Matriptase-1
2013
The Pfam protein families database: towards a more sustainable future
2015 Standout
Within the twilight zone: a sensitive profile-profile comparison tool based on information theory
2002 StandoutNobel
MAFFT version 5: improvement in accuracy of multiple sequence alignment
2005 Standout
MIPS: a database for genomes and protein sequences
2000
Rethinking amide bond synthesis
2011 StandoutNature
Amino acid substitution matrices
2000
The Pfam Protein Families Database
2002 Standout
ExPASy: the proteomics server for in-depth protein knowledge and analysis
2003 Standout
De novo protein design. II. plasticity in sequence space
1999 StandoutNobel
De novo protein design. I. in search of stability and specificity
1999 StandoutNobel
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
2003 StandoutNature
PDB-based protein loop prediction: parameters for selection and methods for optimization
1997 StandoutNobel
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
A comprehensive comparison of multiple sequence alignment programs
1999
MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 Standout
A Bivalent Tarantula Toxin Activates the Capsaicin Receptor, TRPV1, by Targeting the Outer Pore Domain
2010 StandoutNobel
The MPI Bioinformatics Toolkit for protein sequence analysis
2006
ADDA: a domain database with global coverage of the protein universe
2004
Modelling mutations and homologous proteins
1995
Gene Ontology: tool for the unification of biology
2000 Standout
Evaluation of Structural and Evolutionary Contributions to Deleterious Mutation Prediction
2002 StandoutNobel
Enzymatic Primer-Extension with Glycerol-Nucleoside Triphosphates on DNA Templates
2009 StandoutNobel
Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets
2017 StandoutNobel
A heteromeric Texas coral snake toxin targets acid-sensing ion channels to produce pain
2011 StandoutNatureNobel
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
2003 Standout
Screening, large-scale production and structure-based classification of cystine-dense peptides
2018
Functional genomic analysis of C. elegans chromosome I by systematic RNA interference
2000 StandoutNature
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
2016
Engineered cystine knot peptides that bind αvβ3, αvβ5, and α5β1 integrins with low‐nanomolar affinity
2009
Sequence-based prediction of protein domains
2004
Towards a reliable objective function for multiple sequence alignments 1 1Edited by J. Karn
2001
DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches
2000
EVEREST: automatic identification and classification of protein domains in all protein sequences
2006
Identification of Protein Domains by Shotgun Proteolysis
2006 StandoutNobel
Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes
2002
KEGG: Kyoto Encyclopedia of Genes and Genomes
1999 Standout
Bioactive cystine knot proteins
2011
The Future of Peptide‐based Drugs
2012 Standout
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Comparative assessment of large-scale data sets of protein–protein interactions
2002 StandoutNature
The Pfam protein families database
2011 Standout
Multiple sequence alignment with the Clustal series of programs
2003 Standout
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
1999 Standout
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
2002 Standout
Exhaustive Enumeration of Protein Domain Families
2003
New features of the Blocks Database servers
1999
Folding of Conotoxins: Formation of the Native Disulfide Bridges During Chemical Synthesis and Biosynthesis of Conus Peptides
2007
A Simple Glycol Nucleic Acid
2005
Picasso: generating a covering set of protein family profiles
2001
Pfam: The protein families database in 2021
2020 Standout
Growth of novel protein structural data
2007 StandoutNobel
Functional Nucleic Acid Sensors
2009 Standout
Improving Protein Expression, Stability, and Function with ProteinMPNN
2024 StandoutNobel
Coordinating Radiometals of Copper, Gallium, Indium, Yttrium, and Zirconium for PET and SPECT Imaging of Disease
2010 Standout
Plant cystine‐knot peptides: pharmacological perspectives
2016
Aptamers Selected for Higher-Affinity Binding Are Not More Specific for the Target Ligand
2006 StandoutNobel
N2′→P3′ Phosphoramidate Glycerol Nucleic Acid as a Potential Alternative Genetic System
2009 StandoutNobel
Complex networks: Structure and dynamics
2006 Standout
Isolation of Fast Purine Nucleotide Synthase Ribozymes
2004
SIFT: predicting amino acid changes that affect protein function
2003 Standout
The Toxicogenomic Multiverse: Convergent Recruitment of Proteins Into Animal Venoms
2009
Improved recognition of native-like protein structures using a family of designed sequences
2002 StandoutNobel
Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide‐rich de novo designed peptides
2018 StandoutNobel
Conservation and divergence of methylation patterning in plants and animals
2010 Standout
ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space
1999
Enzymatic synthesis of DNA on glycerol nucleic acid templates without stable duplex formation between product and template
2007 StandoutNobel
Mechanical Bonds and Topological Effects in Radical Dimer Stabilization
2014 StandoutNobel
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
2009 Standout
Protein topology and stability define the space of allowed sequences
2002 StandoutNobel
Structure comparison of human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein P14a indicates a functional link between the human immune system and a plant defense system
1998 StandoutNobel
Lys49 myotoxin from the Brazilian lancehead pit viper elicits pain through regulated ATP release
2017 StandoutNobel
Isolation, Sequencing, and Structure−Activity Relationships of Cyclotides
2010
Works of Jérôme Gracy being referenced
Knottin cyclization: impact on structure and dynamics
2008
Automated protein sequence database classification. II. Delineation Of domain boundaries from sequence similarities.
1998
Improved alignment of weakly homologous protein sequences using structural information
1993
KNOTTIN: the database of inhibitor cystine knot scaffold after 10 years, toward a systematic structure modeling
2017
KNOTTIN: the knottin or inhibitor cystine knot scaffold in 2007
2007
DOMO: a new database of aligned protein domains
1998
Structure and folding of disulfide‐rich miniproteins: Insights from molecular dynamics simulations and MM‐PBSA free energy calculations
2008
PAT: a protein analysis toolkit for integrated biocomputing on the web
2005
Squash Inhibitors: From Structural Motifs to Macrocyclic Knottins
2004
Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.
1998