Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing
2020 StandoutScience
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Improved protein structure prediction using predicted interresidue orientations
2020 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
PIEZO ion channel is required for root mechanotransduction in Arabidopsis thaliana
2021 StandoutNobel
Learning Bounds for Domain Adaptation
2007
Connectionist Speech Recognition: A Hybrid Approach
1993
Computational Stabilization of a Non‐Heme Iron Enzyme Enables Efficient Evolution of New Function
2024 StandoutNobel
The Ensembl Regulatory Build
2015
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
De novo design of immunoglobulin-like domains
2022 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions
2016
Discoveries in structure and physiology of mechanically activated ion channels
2020 StandoutNatureNobel
Genetic effects on gene expression across human tissues
2017 StandoutNature
SignalP 5.0 improves signal peptide predictions using deep neural networks
2019 Standout
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
2014
TMC1 Forms the Pore of Mechanosensory Transduction Channels in Vertebrate Inner Ear Hair Cells
2018
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia
2017 StandoutNobel
Fast neural net simulation with a DSP processor array
1995
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
2015 Standout
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
2015
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
In vitro DNA-binding profile of transcription factors: methods and new insights
2011
The Human Transcription Factors
2018 Standout
Integrative annotation of chromatin elements from ENCODE data
2012
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
A general framework for estimating the relative pathogenicity of human genetic variants
2014 Standout
Expediting topology data gathering for the TOPDB database
2014
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
LRRC8 proteins share a common ancestor with pannexins, and may form hexameric channels involved in cell‐cell communication
2012
Massively parallel determination and modeling of endonuclease substrate specificity
2014 StandoutNobel
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
2011 Standout
High resolution mapping of modified DNA nucleobases using excision repair enzymes
2014
NCBI GEO: archive for functional genomics data sets—update
2012 Standout
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
SWELL1, a Plasma Membrane Protein, Is an Essential Component of Volume-Regulated Anion Channel
2014 StandoutNobel
Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs
2013
Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases
2015
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
2010
Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
2014 Standout
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
LRRC8 Proteins Form Volume-Regulated Anion Channels that Sense Ionic Strength
2016 StandoutNobel
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Deep mutational scanning: a new style of protein science
2014
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
2015 StandoutNobel
Machine learning for data-driven discovery in solid Earth geoscience
2019 StandoutScience
The role of chromatin dynamics in immune cell development
2014
Combined prediction of Tat and Sec signal peptides with hidden Markov models
2010
A Novel Hepacivirus with an Unusually Long and Intrinsically Disordered NS5A Protein in a Wild Old World Primate
2013
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
2012
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Characterization of nonprimate hepacivirus and construction of a functional molecular clone
2015 StandoutNobel
Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research Groups
2012 StandoutNobel
DeepSig: deep learning improves signal peptide detection in proteins
2017
EpiMap: Towards quantifying contact networks for understanding epidemiology in developing countries
2012
Signal-3L 2.0: A Hierarchical Mixture Model for Enhancing Protein Signal Peptide Prediction by Incorporating Residue-Domain Cross-Level Features
2017
A Survey on Transfer Learning
2009 Standout
Multimodal Machine Learning: A Survey and Taxonomy
2018 Standout
Structure-based membrane dome mechanism for Piezo mechanosensitivity
2017 Nobel
A Machine Learning Approach for Improving the Detection Capabilities at 3C Seismic Stations
2012
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Gradient-based learning applied to document recognition
1998 Standout
Works of Jeff Bilmes being referenced
Software for ANN training on a Ring Array Processor
1991
Deep Canonical Correlation Analysis
2013
Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure
2011
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
2012
Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks
2008
A Bayesian Divergence Prior for Classiffier Adaptation
2007
Inferring colocation and conversation networks from privacy-sensitive audio with implications for computational social science
2011
The graphical models toolkit: An open source software system for speech and time-series processing
2002
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data
2010
The ring array processor: A multiprocessing peripheral for connectionist applications
1992