Jeea Choi

Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization

Inference and analysis of cell-cell communication using CellChat

High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa

SCANPY: large-scale single-cell gene expression data analysis

Understanding tumor ecosystems by single-cell sequencing: promises and limitations

The history and advances in cancer immunotherapy: understanding the characteristics of tumor-infiltrating immune cells and their therapeutic implications

FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data

Determining cell type abundance and expression from bulk tissues with digital cytometry

Single-cell RNA-seq denoising using a deep count autoencoder

Fast, sensitive and accurate integration of single-cell data with Harmony

Revealing the vectors of cellular identity with single-cell genomics

SCENIC: single-cell regulatory network inference and clustering

SCnorm: robust normalization of single-cell RNA-seq data

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer

Computational approaches for interpreting scRNA‐seq data

Reversed graph embedding resolves complex single-cell trajectories

Missing data and technical variability in single-cell RNA-sequencing experiments

Understanding development and stem cells using single cell-based analyses of gene expression

Single-cell transcriptomics to explore the immune system in health and disease

Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression

The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments