Standout Papers
Citation Impact
Citing Papers
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
2005 Standout
Neurotoxic protein expression reveals connections between the circadian clock and mating behavior in Drosophila
2006 StandoutNobel
Identifying differentially expressed genes usingfalse discovery rate controlling procedures
2003
Modulation of immune cell reactivity with cis -binding Siglec agonists
2021 StandoutNobel
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
2009 Standout
A fast, single-vesicle fusion assay mimics physiological SNARE requirements
2010 StandoutNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Replicated microarray data
2001
On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data
2001
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
WGCNA: an R package for weighted correlation network analysis
2008 Standout
The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana
2014
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
A scaling normalization method for differential expression analysis of RNA-seq data
2010 Standout
Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes
2007
Empirical array quality weights in the analysis of microarray data
2006
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments
2006
[9] TM4 Microarray Software Suite
2006 Standout
Benefits and limitations of genome-wide association studies
2019
Short-Term Effects of Nose-Only Cigarette Smoke Exposure on Glutathione Redox Homeostasis, Cytochrome P450 1A1/2 and Respiratory Enzyme Activities in Mice Tissues
2013 Standout
Gene selection: a Bayesian variable selection approach
2002
RACE: Remote Analysis Computation for gene Expression data
2005
Influence of Metabolism on Epigenetics and Disease
2013 StandoutNobel
Normal uniform mixture differential gene expression detection for cDNA microarrays
2005
A two-sample Bayesian t-test for microarray data
2006
Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis
2007
Comprehensive comparative analysis of strand-specific RNA sequencing methods
2010
Inactivation of Conserved C. elegans Genes Engages Pathogen- and Xenobiotic-Associated Defenses
2012 StandoutNobel
The Expanding Social Network of Ionotropic Glutamate Receptors: TARPs and Other Transmembrane Auxiliary Subunits
2011
Cancer Epigenetics: From Mechanism to Therapy
2012 Standout
Normalization of cDNA microarray data
2003 Standout
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
2008
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
2011
mTOR at the nexus of nutrition, growth, ageing and disease
2020 Standout
A stress response pathway regulates DNA damage through β2-adrenoreceptors and β-arrestin-1
2011 StandoutNatureNobel
Nonparametric methods for identifying differentiallyexpressed genes in microarray data
2002
Anti-Fungal Innate Immunity in C. elegans Is Enhanced by Evolutionary Diversification of Antimicrobial Peptides
2008
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis
2006
Circular binary segmentation for the analysis of array-based DNA copy number data
2004
GC-Content Normalization for RNA-Seq Data
2011
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
2014 Nature
The use of miRNA microarrays for the analysis of cancer samples with global miRNA decrease
2013
A role of PIEZO1 in iron metabolism in mice and humans
2021 StandoutNobel
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
2004 Standout
Transcriptional control of synaptic differentiation by retrograde signals
2004
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
The MicroRNA miR-1 Regulates a MEF-2-Dependent Retrograde Signal at Neuromuscular Junctions
2008 StandoutNobel
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
2002 Standout
Use of within-array replicate spots for assessing differential expression in microarray experiments
2005
Goulphar: rapid access and expertise for standard two-color microarray normalization methods
2006
Safety and Efficacy of an Inhaled Epidermal Growth Factor Receptor Inhibitor (BIBW 2948 BS) in Chronic Obstructive Pulmonary Disease
2009
Role of IGF Signaling in Olfactory Sensory Map Formation and Axon Guidance
2008
A comparison of normalization methods for high densityoligonucleotide array data based on variance and bias
2003 Standout
Summaries of Affymetrix GeneChip probe level data
2003 Standout
A prediction-based resampling method for estimating the number of clusters in a dataset
2002
Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
2008
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
2003 Standout
Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
2013 Standout
Candidate regulators of mammary branching morphogenesis identified by genome‐wide transcript analysis
2006
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
2005
Separate-channel analysis of two-channel microarrays: recovering inter-spot information
2013
Airway Mucus Function and Dysfunction
2010 Standout
Export of microRNAs and microRNA-protective protein by mammalian cells
2010
Induced gene expression in human brain after the split from chimpanzee
2003
Activity-Dependent IGF-1 Exocytosis Is Controlled by the Ca2+-Sensor Synaptotagmin-10
2011 StandoutNobel
Evolution of gene expression in the Drosophila melanogaster subgroup
2003
Application of the S-score algorithm for analysis of oligonucleotide microarrays
2003
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
2016 StandoutNobel
Processing and classification of protein mass spectra
2006
Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls
2001
T-helper Type 2–driven Inflammation Defines Major Subphenotypes of Asthma
2009
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
IL-13 and Epidermal Growth Factor Receptor Have Critical but Distinct Roles in Epithelial Cell Mucin Production
2006
Regulation of Neuregulin 1β1–Induced MUC5AC and MUC5B Expression in Human Airway Epithelium
2009
Elucidation of AMPA receptor–stargazin complexes by cryo–electron microscopy
2016 StandoutScienceNobel
Signal Regulatory Protein Molecules Are Differentially Expressed by CD8− Dendritic Cells
2006
Empirical Bayes Analysis of a Microarray Experiment
2001
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
Estimating the Proportion of True Null Hypotheses, with application to DNA Microarray Data
2005
Ago HITS-CLIP Expands Understanding of Kaposi's Sarcoma-associated Herpesvirus miRNA Function in Primary Effusion Lymphomas
2012
Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees
2005 StandoutScienceNobel
A comparison of background correction methods for two-colour microarrays
2007
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
2009 Standout
Transcriptional neoteny in the human brain
2009 StandoutNobel
Decrease in topoisomerase I is responsible for activation-induced cytidine deaminase (AID)-dependent somatic hypermutation
2011 StandoutNobel
Cardiac hypertrophy and sudden death in mice with a genetically clamped renin transgene
2004 StandoutNobel
Comparable T helper 1 (Th1) and CD8 T-cell immunity by targeting HIV gag p24 to CD8 dendritic cells within antibodies to Langerin, DEC205, and Clec9A
2011 StandoutNobel
Functional Genomics Reveals Extended Roles of the Mycobacterium tuberculosis Stress Response Factor σ H
2009
IL-4 Receptor Signaling in Clara Cells Is Required for Allergen-Induced Mucus Production
2005
Kinase requirements in human cells: III. Altered kinase requirements inVHL−/− cancer cells detected in a pilot synthetic lethal screen
2008 StandoutNobel
Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase
2013 StandoutNobel
Microarray gene expression profiles in dilated and hypertrophic cardiomyopathic end-stage heart failure
2002
Multiple Hypothesis Testing in Microarray Experiments
2003
Donor-dependent variations in hepatic differentiation from human-induced pluripotent stem cells
2012 StandoutNobel
The prognostic and functional role of microRNAs in acute myeloid leukemia
2010
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
2011
Multidimensional local false discovery rate for microarray studies
2005
Selecting features in microarray classification using ROC curves
2006
Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling
2015
Nuclear repartitioning of galectin-1 by an extracellular glycan switch regulates mammary morphogenesis
2016 StandoutNobel
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
2003
Analyzing gene expression data in terms of gene sets: methodological issues
2007
Adjusting batch effects in microarray expression data using empirical Bayes methods
2006 Standout
MyD88 signaling in nonhematopoietic cells protects mice against induced colitis by regulating specific EGF receptor ligands
2010 StandoutNobel
Mechanisms of cigarette smoke-induced COPD: insights from animal models
2008
Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
2002 Standout
Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination
2010 StandoutNobel
Finite Scale of Spatial Representation in the Hippocampus
2008 StandoutScienceNobel
A review of feature selection techniques in bioinformatics
2007 Standout
On the use of permutation in and the performanceof a class of nonparametric methods to detectdifferential gene expression
2003
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
MOLECULAR GRADIENTS AND DEVELOPMENT OF RETINOTOPIC MAPS
2005
Works of Jean Yang being referenced
Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids
2007
STATISTICAL METHODS FOR IDENTIFYING DIFFERENTIALLY EXPRESSED GENES IN REPLICATED cDNA MICROARRAY EXPERIMENTS
2002
Comparison study of microarray meta-analysis methods
2010
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
2013
Design issues for cDNA microarray experiments
2002
PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications
2015
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
2002 Standout
Disease-Specific Gene Expression Profiling in Multiple Models of Lung Disease
2007
Freshly isolated rat alveolar type I cells, type II cells, and cultured type II cells have distinct molecular phenotypes
2004
Statistical Issues in cDNA Microarray Data Analysis
2003
Analysis of cDNA microarray images
2001
Identifying differentially expressed genes from microarray experiments via statistic synthesis
2004
Dissecting asthma using focused transgenic modeling and functional genomics
2005
Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data
2015
miR-10a is aberrantly overexpressed in Nucleophosmin1 mutated acute myeloid leukaemia and its suppression induces cell death
2012
Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data
2009
Expression profiling of cytogenetically normal acute myeloid leukemia identifies MicroRNAs that target genes involved in monocytic differentiation
2010
A Distinctive Alveolar Macrophage Activation State Induced by Cigarette Smoking
2005
Spatial patterns of gene expression in the olfactory bulb
2004
<title>Normalization for cDNA microarry data</title>
2001
A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays
2007
Comparison of Methods for Image Analysis on cDNA Microarray Data
2002
Analysis of gene expression in the developing mouse retina
2003
Molecular Analysis of Gene Expression in the Developing Pontocerebellar Projection System
2002