Citation Impact

Citing Papers

Identifying biologically relevant differences between metagenomic communities
2010
The Sequence Alignment/Map format and SAMtools
2009 Standout
The diversity and biogeography of soil bacterial communities
2006 Standout
Highways of gene sharing in prokaryotes
2005
Obesity alters gut microbial ecology
2005 Standout
Sequencing and Analysis of Neanderthal Genomic DNA
2006 StandoutScienceNobel
Metagenomic Analysis of the Human Distal Gut Microbiome
2006 StandoutScience
Genomic Sequencing of Pleistocene Cave Bears
2005 Science
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
2008 Standout
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
2006 Nature
Microbial structuring of marine ecosystems
2007
Directed evolution of enzymes and biosynthetic pathways
2006
Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome
1993 StandoutNatureNobel
By-passing immunization
1991 StandoutNobel
The contribution of species richness and composition to bacterial services
2005 Nature
Binding activities of a repertoire of single immunoglobulin variable domains secreted from Escherichia coli
1989 StandoutNatureNobel
Combinatorial and computational challenges for biocatalyst design
2001 StandoutNatureNobel
Biocatalytic synthesis of oligosaccharides
1999
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
2009
Man-made antibodies
1991 NatureNobel
A phosphatidylinositol-3-OH kinase family member regulating longevity and diapause in Caenorhabditis elegans
1996 StandoutNatureNobel
Production of human antibodies using bacteriophage
1993
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
1998 StandoutNatureNobel
Human and mouse monoclonal antibodies by repertoire cloning
1991
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
2010 StandoutNatureNobel
The G Protein-coupled Receptor CL1 Interacts Directly with Proteins of the Shank Family
2000 StandoutNobel
Isolation of an autotrophic ammonia-oxidizing marine archaeon
2005 StandoutNature
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
1993 StandoutNobel
Metagenomic biomarker discovery and explanation
2011 Standout
Metagenomics: Facts and Artifacts, and Computational Challenges
2010
Oligonucleotide primers for polymerase chain reaction amplification of human immunoglobulin variable genes and design of family‐specific oligonucleotide probes
1991 StandoutNobel
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
2012 StandoutNature
Mutations in the p53 gene occur in diverse human tumour types
1989 StandoutNature
The C. elegans genome sequencing project: a beginning
1992 StandoutNatureNobel
PAS is a dimerization domain common to Drosophila Period and several transcription factors
1993 StandoutNatureNobel
The immune response of Drosophila
2003 StandoutNatureNobel
Naturally occurring antibodies devoid of light chains
1993 StandoutNature
Phage lambda cDNA cloning vectors for subtractive hybridization, fusion-protein synthesis and Cre-loxP automatic plasmid subcloning
1990
Unlocking the potential of metagenomics through replicated experimental design
2012
Building Antibodies from their Genes
1992 StandoutNobel
Structure of a nanobody-stabilized active state of the β2 adrenoceptor
2011 StandoutNatureNobel
Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes
2007
Neuroligins and neurexins link synaptic function to cognitive disease
2008 StandoutNatureNobel
The Human Microbiome Project
2007 StandoutNature
Phage antibodies: filamentous phage displaying antibody variable domains
1990 StandoutNatureNobel
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine
2006 Standout
Quantitative reactivity profiling predicts functional cysteines in proteomes
2010 StandoutNatureNobel
Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
2008 Standout
The Earth’s bounty: assessing and accessing soil microbial diversity
1999
The mec-4 gene is a member of a family of Caenorhabditis elegans genes that can mutate to induce neuronal degeneration
1991 StandoutNatureNobel
An evolutionary route to xylanase process fitness
2004
Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance
2011
TOWARD AN ECOLOGICAL CLASSIFICATION OF SOIL BACTERIA
2007 Standout
Making antibody fragments using phage display libraries
1991 StandoutNatureNobel
Directed evolution of enzyme stability
2005
In-cell PCR from mRNA: amplifying and linking the rearranged immunoglobulin heavy and light chain V-genes within single cells
1992 StandoutNobel
Analysis of one million base pairs of Neanderthal DNA
2006 StandoutNatureNobel
Evolution of protein function by Domain swapping
2001
Cloning by functional expression of a member of the glutamate receptor family
1989 Nature
Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
2012
MEGAN analysis of metagenomic data
2007 Standout
In vitro selection and affinity maturation of antibodies from a naive combinatorial immunoglobulin library.
1992
Origins of immunity: Relish, a compound Rel-like gene in the antibacterial defense of Drosophila.
1996
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
2012 Standout
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
2006
Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along phage surfaces.
1991
In the light of directed evolution: Pathways of adaptive protein evolution
2009 StandoutNobel
Primary Structure And Functional Expression of the 5HT 3 Receptor, A Serotonin-gated Ion Channel
1991 StandoutScienceNobel
Chemical Glycobiology
2001 StandoutScienceNobel
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
2006 Science
Genetic and molecular analysis of a Caenorhabditis elegans beta-tubulin that conveys benzimidazole sensitivity.
1989 StandoutNobel
High-Throughput Identification of Catalytic Redox-Active Cysteine Residues
2007 Science
Cloning of the Ah-receptor cDNA reveals a distinctive ligand-activated transcription factor.
1992
Antibody fragments from a ‘single pot’ phage display library as immunochemical reagents.
1994 StandoutNobel
A Family of AMPA-Selective Glutamate Receptors
1990 StandoutScienceNobel
Structural Determinants of Ion Flow Through Recombinant Glutamate Receptor Channels
1991 StandoutScienceNobel
Generation of diverse high-affinity human monoclonal antibodies by repertoire cloning.
1991
Structure, variation, and assembly of the root-associated microbiomes of rice
2015 Standout
Toward molecular trait‐based ecology through integration of biogeochemical, geographical and metagenomic data
2011
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Making Antibodies by Phage Display Technology
1994 StandoutNobel
Human combinatorial antibody libraries to hepatitis B surface antigen.
1992
Structure, fluctuation and magnitude of a natural grassland soil metagenome
2012
Flip and Flop: A Cell-Specific Functional Switch in Glutamate-Operated Channels of the CNS
1990 StandoutScienceNobel
Effect of Different Carbon Sources on Community Composition of Bacterial Enrichments from Soil
2005
Assembly of combinatorial antibody libraries on phage surfaces: the gene III site.
1991
Resistance, resilience, and redundancy in microbial communities
2008 Standout
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
2009 Standout
Visual and statistical comparison of metagenomes
2009
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
2010
A MAP kinase homolog, mpk-1, is involved in ras-mediated induction of vulval cell fates in Caenorhabditis elegans.
1994 StandoutNobel
Next-Generation DNA Sequencing Methods
2008
Synthesis of Complex Carbohydrates and Glycoconjugates:  Enzyme-Based and Programmable One-Pot Strategies
2000
Phylogenetic Perspectives in Innate Immunity
1999 StandoutScienceNobel
Generation of a Large Combinatorial Library of the Immunoglobulin Repertoire in Phage Lambda
1989 Science
Molecular evolution of proteins on filamentous phage. Mimicking the strategy of the immune system.
1992 StandoutNobel
Monoclonal Antibodies in Diagnosis and Therapy
1991 Science
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
The Uncultured Microbial Majority
2003
Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms
2000

Works of Jay M. Short being referenced

Genome Streamlining in a Cosmopolitan Oceanic Bacterium
2005 Science
Chemical and enzymatic synthesis of glycoconjugates 5: One-pot regioselective synthesis of bioactive galactobiosides using a CLONEZYMETM thermophilic glycosidase library
1999
Molecular Evolution: Recombinant approaches for accessing biodiversity
1997
Discovery of Pectin-degrading Enzymes and Directed Evolution of a Novel Pectate Lyase for Processing Cotton Fabric
2004
λ ZAP: a bacteriophage λ expression vector within vivoexcision properties
1988
Cultivating the uncultured
2002
Identification of human antibody fragment clones specific for tetanus toxoid in a bacteriophage lambda immunoexpression library.
1990
Enhancing the Thermal Tolerance and Gastric Performance of a Microbial Phytase for Use as a Phosphate-Mobilizing Monogastric-Feed Supplement
2004
Cloning of the immunological repertoire in Escherichia coli for generation of monoclonal catalytic antibodies: construction of a heavy chain variable region-specific cDNA library.
1989
Chemical and enzymatic synthesis of glycoconjugates 4. Control of regioselectivity in high yielding synthesis of (β-D-fucopyranosyl)-O-D-xylopyranosyl disaccharides using a CLONEZYME™ thermophilic glycosidase
1998
Comparative Metagenomics of Microbial Communities
2005 Science
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