Standout Papers
Citation Impact
Citing Papers
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
2009 Standout
Identifying biologically relevant differences between metagenomic communities
2010
Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation
2014 StandoutScienceNobel
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
2011 StandoutScience
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
2012 Standout
UCHIME improves sensitivity and speed of chimera detection
2011 Standout
Delivery of MicroRNA-126 by Apoptotic Bodies Induces CXCL12-Dependent Vascular Protection
2009
The Human Oral Microbiome
2010 Standout
Regulation of phosphoinositide 3-kinase expression in health and disease
2009
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Regulation of Angiogenesis by Oxygen and Metabolism
2009
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
2011
Hallmarks of Cancer: The Next Generation
2011 Standout
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
2011 Standout
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
2010
FunGene: the functional gene pipeline and repository
2013
ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time
2011
Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine
2009
Interspecies Systems Biology Uncovers Metabolites Affecting C. elegans Gene Expression and Life History Traits
2014
MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer
2009
MicroRNA-mediated integration of haemodynamics and Vegf signalling during angiogenesis
2010 Nature
A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies
2009
Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?
2010
Genetics, epigenetics and pharmaco‐(epi)genomics in angiogenesis
2008
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
2011 Standout
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
2016 Standout
From Cell Structure to Transcription: Hippo Forges a New Path
2006
Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults
2010 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity
2014 StandoutNobel
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats
2011
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
PANDAseq: paired-end assembler for illumina sequences
2012 Standout
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Mst2 and Lats Kinases Regulate Apoptotic Function of Yes Kinase-associated Protein (YAP)
2008
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
2011
Sequencing our way towards understanding global eukaryotic biodiversity
2012
Microbial Co-occurrence Relationships in the Human Microbiome
2012 Standout
Foreign DNA capture during CRISPR–Cas adaptive immunity
2015 StandoutNatureNobel
Metagenomic biomarker discovery and explanation
2011 Standout
A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
2011
Control of cardiovascular differentiation by microRNAs
2010
Linking actin dynamics and gene transcription to drive cellular motile functions
2010
Functional interactions between the gut microbiota and host metabolism
2012 StandoutNature
MAFFT: Iterative Refinement and Additional Methods
2013
Bioinformatic challenges for DNA metabarcoding of plants and animals
2012
Microbial interactions: from networks to models
2012 Standout
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
2011
Diet rapidly and reproducibly alters the human gut microbiome
2013 StandoutNature
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
Hippo signaling in organ size control
2007
DADA2: High-resolution sample inference from Illumina amplicon data
2016 Standout
Adding unaligned sequences into an existing alignment using MAFFT and LAST
2012
Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis
2010
A global network of coexisting microbes from environmental and whole-genome sequence data
2010
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
2016 StandoutNatureNobel
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
2013 Standout
The PtdIns(3,4)P2 phosphatase INPP4A is a suppressor of excitotoxic neuronal death
2010 StandoutNatureNobel
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
2014
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
CasX enzymes comprise a distinct family of RNA-guided genome editors
2019 StandoutNatureNobel
Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria
2010
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences
2009
Molecular mechanisms and clinical applications of angiogenesis
2011 StandoutNature
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
2013 Standout
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
2016 StandoutNatureNobel
Ribosomal Database Project: data and tools for high throughput rRNA analysis
2013 Standout
Developmental and Pathological Angiogenesis
2011
Elucidation of a Universal Size-Control Mechanism in Drosophila and Mammals
2007 Standout
PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets
2012
Role of YAP/TAZ in mechanotransduction
2011 StandoutNature
Remote ischaemic preconditioning involves signalling through the SDF-1α/CXCR4 signalling axis
2013
Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier
2019 StandoutNobel
Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
2011
Infernal 1.0: inference of RNA alignments
2009
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
2010
Lysosomal activity regulatesCaenorhabditis elegansmitochondrial dynamics through vitamin B12 metabolism
2020 StandoutNobel
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
2011
Infernal 1.1: 100-fold faster RNA homology searches
2013 Standout
Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes
2011
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
2011
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
2015 StandoutNobel
Identification of simple arylfluorosulfates as potent agents against resistant bacteria
2021 StandoutNobel
Cancer Genome Landscapes
2013 StandoutScience
Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data.
2012
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
PANGEA: pipeline for analysis of next generation amplicons
2010
A general species delimitation method with applications to phylogenetic placements
2013 Standout
OTUbase: an R infrastructure package for operational taxonomic unit data
2011
Structural RNA Homology Search and Alignment Using Covariance Models
2009
The makers of the Protoaurignacian and implications for Neandertal extinction
2015 StandoutScienceNobel
Hypoxia-inducible factor 1 is required for remote ischemic preconditioning of the heart
2013 StandoutNobel
Caenorhabditis elegans responses to bacteria from its natural habitats
2016 StandoutNobel
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
Works of Jason E. Fish being referenced
miR-155 Modifies Inflammation, Endothelial Activation and Blood-Brain Barrier Dysfunction in Cerebral Malaria
2017
Lats2/Kpm is required for embryonic development, proliferation control and genomic integrity
2004
MicroRNA Regulation of Cell Lineages in Mouse and Human Embryonic Stem Cells
2008
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
2008 Standout
miR-126 Regulates Angiogenic Signaling and Vascular Integrity
2008
Stromal Cell–Derived Factor-1α Is Cardioprotective After Myocardial Infarction
2008