Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
The mucin-selective protease StcE enables molecular and functional analysis of human cancer-associated mucins
2019 StandoutNobel
Identification of a Primary Target of Thalidomide Teratogenicity
2010 StandoutScience
Unusual DNA Structures Associated With Germline Genetic Activity in Caenorhabditis elegans
2006 StandoutNobel
Characterization of a canine homolog of hepatitis C virus
2011 StandoutNobel
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Hierarchical Organization of Modularity in Metabolic Networks
2002 StandoutScience
High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes
2006
Identification of endogenous retroviral reading frames in the human genome
2004
Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes
2012
Human Endogenous Retroviruses in Neurological Diseases
2018
Finishing the euchromatic sequence of the human genome
2004 StandoutNature
GC Composition of the Human Genome: In Search of Isochores
2005
The microcephaly ASPM gene is expressed in proliferating tissues and encodes for a mitotic spindle protein
2005
L1 retrotransposition in human neural progenitor cells
2009 Nature
Adaptors and linkers in T and B cells
2004
Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
2015 Nature
Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
2002
Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome
2013
Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis
2002
Nomenclature of the ARID family of DNA-binding proteins
2005
The Human Intestinal Microbiome in Health and Disease
2016 Standout
Mobile elements create structural variation: Analysis of a complete human genome
2009
Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons
2005
Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons
2006
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
Pax7 Is Required for the Specification of Myogenic Satellite Cells
2000 Standout
Transcriptional Profiling of Human Endogenous Retrovirus Group HERV-K(HML-2) Loci in Melanoma
2013
Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
2003
Classification and characterization of human endogenous retroviruses; mosaic forms are common
2016
Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity
2015 Standout
Six family genes-structure and function as transcription factors and their roles in development
2000
The SWI/SNF complex and cancer
2009
The Mammalian Epigenome
2007 Standout
Lineage-Specific Expansions of Retroviral Insertions within the Genomes of African Great Apes but Not Humans and Orangutans
2005 StandoutNobel
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Conserved usage of gap and homeotic genes in patterning the CNS
1999
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes
2009
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
2011 Standout
Insights into the urbilaterian brain: conserved genetic patterning mechanisms in insect and vertebrate brain development
2005
Initial sequence of the chimpanzee genome and comparison with the human genome
2005 StandoutNature
Diet rapidly and reproducibly alters the human gut microbiome
2013 StandoutNature
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
2017 Standout
Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
2007 StandoutNobel
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
2006 Standout
Tunicates and not cephalochordates are the closest living relatives of vertebrates
2006 StandoutNature
Hedgehog signaling in animal development: paradigms and principles
2001 Standout
Epigenomics: beyond CpG islands
2004
The Origin and Diversification of Mitochondria
2017
A Genome-Wide Survey of Human Pseudogenes
2003
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
2000
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
The chordate amphioxus: an emerging model organism for developmental biology
2004
Hox11 paralogous genes are essential for metanephric kidney induction
2002 StandoutNobel
The evolutionary dynamics of eukaryotic gene order
2004
Signaling to NF-κB
2004 Standout
PAML 4: Phylogenetic Analysis by Maximum Likelihood
2007 Standout
Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses
2008
Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
2008
From insect eye to vertebrate muscle: redeployment of a regulatory network
1999
Repbase Update, a database of eukaryotic repetitive elements
2005 Standout
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
2010 StandoutNature
The Retinoblastoma Binding Protein RBP2 Is an H3K4 Demethylase
2007 StandoutNobel
Human DNA methylomes at base resolution show widespread epigenomic differences
2009 StandoutNature
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Maintenance of gene expression patterns
2005
Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors?
2013
Origin of the vertebrate inner ear: evolution and induction of the otic placode
2001
Gene Expression, Synteny, and Local Similarity in Human Noncoding Mutation Rates
2004
Evolution of primate gene expression
2006 StandoutNobel
Pharyngeal arch patterning in the absence of neural crest
1999
Quadruplex DNA: sequence, topology and structure
2006 Standout
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
2013 Standout
Dynamics of CRISPR-Cas9 genome interrogation in living cells
2015 StandoutScienceNobel
Detection of Trichomonosis in Vaginal and Urine Specimens from Women by Culture and PCR
2000
Gene Regulatory Networks and the Evolution of Animal Body Plans
2006 StandoutScience
Inactivation of the PBRM1 tumor suppressor gene amplifies the HIF-response in VHL −/− clear cell renal carcinoma
2017 StandoutNobel
Trichomoniasis
2004 Standout
Duplication, coclustering, and selection of human Alu retrotransposons
2004
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
Complex networks: Structure and dynamics
2006 Standout
Signaling circuitries in development: insights from the retinal determination gene network
2004
AnFgf8mouse mutant phenocopies human 22q11 deletion syndrome
2002 StandoutNobel
The Caenorhabditis elegans ARIP-4 DNA helicase couples mitochondrial surveillance to immune, detoxification, and antiviral pathways
2022 StandoutNobel
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Mechanism of Nitrogen Fixation by Nitrogenase: The Next Stage
2014 Standout
Aspm specifically maintains symmetric proliferative divisions of neuroepithelial cells
2006 StandoutNobel
Colorimetric one-tube nested PCR for detection of Trichomonas vaginalis in vaginal discharge
1997
Galectins: Multitask signaling molecules linking fibroblast, endothelial and immune cell programs in the tumor microenvironment
2018
Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline
2010 StandoutNobel
Positive selection of primate TRIM5 α identifies a critical species-specific retroviral restriction domain
2005
TheCaenorhabditis elegansems class homeobox gene ceh-2 is required for M3 pharynx motoneuron function
2003 StandoutNobel
Works of Jan Pačes being referenced
HERVd: database of human endogenous retroviruses
2002
HERVd: the Human Endogenous RetroViruses Database: update
2003
Molecular cloning and expression of the human and mouse homologues of the Drosophila dachshund gene
1999
Retroposition of processed pseudogenes: the impact of RNA stability and translational control
2005
Upregulation of IL‐6, IL‐8 and CXCL‐1 production in dermal fibroblasts by normal/malignant epithelial cells in vitro: Immunohistochemical and transcriptomic analyses
2012
Lateral Gene Transfer and Gene Duplication Played a Key Role in the Evolution of Mastigamoeba balamuthi Hydrogenosomes
2015
Characterization of Mammalian Orthologues of the Drosophila osa Gene: cDNA Cloning, Expression, Chromosomal Localization, and Direct Physical Interaction with Brahma Chromatin-Remodeling Complex
2001
Cloning and characterization of a repetitive DNA sequence specific for Trichomonas vaginalis
1992
Bacteriophage B103: complete DNA sequence of its genome and relationship to other Bacillus phages
1997
Processed Pseudogenes of Human Endogenous Retroviruses Generated by LINEs: Their Integration, Stability, and Distribution
2002
WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences
2004
New insight into transcription of human endogenous retroviral elements
2012
Genes, isochores and bands in human chromosomes 21 and 22
2001
LIME
2003
NIF-type iron-sulfur cluster assembly system is duplicated and distributed in the mitochondria and cytosol of Mastigamoeba balamuthi
2013
Long-term reinfection of the human genome by endogenous retroviruses
2004
Complete Genome Sequence of the Haloaromatic Acid-Degrading Bacterium Achromobacter xylosoxidans A8
2010
Characterization of an amphioxus paired box gene,AmphiPax2/5/8: developmental expression patterns in optic support cells, nephridium, thyroid-like structures and pharyngeal gill slits, but not in the midbrain-hindbrain boundary region
1999
Similar integration but different stability of Alus and LINEs in the human genome
2001
Sequence of a 189-kb segment of the chromosome of Rhodobacter capsulatus SB1003
1997
Complete Genome Sequence of the Photosynthetic Purple Nonsulfur Bacterium Rhodobacter capsulatus SB 1003
2010
Length distribution of long interspersed nucleotide elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection
2002
A compact view of isochores in the draft human genome sequence
2002