Citation Impact
Citing Papers
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Bilayer-Mediated Structural Transitions Control Mechanosensitivity of the TREK-2 K2P Channel
2017
Enhancing extracellular vesicle cargo loading and functional delivery by engineering protein-lipid interactions
2024 StandoutNobel
GROMACS: Fast, flexible, and free
2005 Standout
Discoveries in structure and physiology of mechanically activated ion channels
2020 StandoutNatureNobel
Atomic packing and short-to-medium-range order in metallic glasses
2006 StandoutNature
Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes
2024 StandoutNobel
Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes
2019
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis 1 1Edited by A. R. Fersht
1999 StandoutNobel
Molecular Dynamics Simulation for All
2018 Standout
The Amber biomolecular simulation programs
2005 Standout
Scalable molecular dynamics with NAMD
2005 Standout
Structural snapshots of TRPV1 reveal mechanism of polymodal functionality
2021 StandoutNobel
Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA
1991 StandoutNobel
Uniquantal Release through a Dynamic Fusion Pore Is a Candidate Mechanism of Hair Cell Exocytosis
2014 StandoutNobel
Structural basis of outer membrane protein insertion by the BAM complex
2016 Nature
On the origin of the electrostatic barrier for proton transport in aquaporin
2004 StandoutNobel
Biomembranes in atomistic and coarse-grained simulations
2015
Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
2003 StandoutNobel
Perspective on the Martini model
2013
Torsion angle dynamics for NMR structure calculation with the new program Dyana
1997 StandoutNobel
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
2015
The surface constraint all atom model provides size independent results in calculations of hydration free energies
1998 StandoutNobel
Ion Transport and the True Transference Number in Nonaqueous Polyelectrolyte Solutions for Lithium Ion Batteries
2019
Transport in Proton Conductors for Fuel-Cell Applications: Simulations, Elementary Reactions, and Phenomenology
2004 Standout
The ion selectivity filter is not an activation gate in TRPV1-3 channels
2019
Noncovalent Functionalization of Graphene and Graphene Oxide for Energy Materials, Biosensing, Catalytic, and Biomedical Applications
2016 Standout
Computer Simulation of Liquids
2017 Standout
Femtosecond reaction dynamics in the gas-to-liquid transition region: Observation of a three-phase density dependence
1996 StandoutNobel
Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models
2000 Standout
CHARMM‐GUI: A web‐based graphical user interface for CHARMM
2008 Standout
Tailored Porous Materials
1999 StandoutNobel
Pre-transition effects mediate forces of assembly between transmembrane proteins
2016
Keeping the shape but changing the charges: A simulation study of urea and its iso-steric analogs
1996 StandoutNobel
Lipid Enhanced Exfoliation for Production of Graphene Nanosheets
2013
A Combined Experimental–Computational Investigation of Methane Adsorption and Selectivity in a Series of Isoreticular Zeolitic Imidazolate Frameworks
2013 StandoutNobel
Reversible multiple time scale molecular dynamics
1992 Standout
A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions
2000 Standout
Improved Parameters for the Martini Coarse-Grained Protein Force Field
2012
Constant pressure molecular dynamics simulation: The Langevin piston method
1995 Standout
Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus
2017 StandoutNobel
Capturing Phase Behavior of Ternary Lipid Mixtures with a Refined Martini Coarse-Grained Force Field
2018
How Hydrophobic Buckminsterfullerene Affects Surrounding Water Structure
2008 StandoutNobel
Detailed Hydration Maps of Benzene and Cyclohexane Reveal Distinct Water Structures
2004 StandoutNobel
Constant pressure molecular dynamics algorithms
1994 Standout
Dissipative particle dynamics: Bridging the gap between atomistic and mesoscopic simulation
1997 Standout
Hydrogen-bond kinetics in liquid water
1996 StandoutNature
Ionic Conduction Mechanism and Design of Metal–Organic Framework Based Quasi-Solid-State Electrolytes
2022 StandoutNobel
Canonical sampling through velocity rescaling
2007 Standout
A reactive potential for hydrocarbons with intermolecular interactions
2000 Standout
The SIESTA method forab initioorder-Nmaterials simulation
2002 Standout
Quantum Mechanical Continuum Solvation Models
2005 Standout
Fast Parallel Algorithms for Short-Range Molecular Dynamics
1995 Standout
Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew
2004 Standout
Calibration and Testing of a Water Model for Simulation of the Molecular Dynamics of Proteins and Nucleic Acids in Solution
1997 StandoutNobel
Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations
2019 StandoutNobel
COMPASS: An ab Initio Force-Field Optimized for Condensed-Phase ApplicationsOverview with Details on Alkane and Benzene Compounds
1998 Standout
Simulating the Effect of DNA Polymerase Mutations on Transition-State Energetics and Fidelity: Evaluating Amino Acid Group Contribution and Allosteric Coupling for Ionized Residues in Human Pol β
2006 StandoutNobel
A smooth particle mesh Ewald method
1995 Standout
Works of Jan Domański being referenced
Lipidbook: A Public Repository for Force-Field Parameters Used in Membrane Simulations
2010
Transmembrane helices can induce domain formation in crowded model membranes
2011
Convergence and Sampling in Determining Free Energy Landscapes for Membrane Protein Association
2016
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
2016