Citation Impact
Citing Papers
Programmed cell death 1 inhibits inflammatory helper T-cell development through controlling the innate immune response
2013 StandoutNobel
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
The maternal interleukin-17a pathway in mice promotes autism-like phenotypes in offspring
2016 StandoutScience
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
2009 Standout
Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
2011 StandoutScience
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
2010 Science
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
2009 StandoutScience
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
2009
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
CD4 T Cells Promote Rather than Control Tuberculosis in the Absence of PD-1–Mediated Inhibition
2010
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Detection and correction of false segmental duplications caused by genome mis-assembly
2010
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
The Three Mycobacterium tuberculosis Antigen 85 Isoforms Have Unique Substrates and Activities Determined by Non-active Site Regions
2014
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
2011 Standout
Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis
2016
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
2014
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
X4 and R5 HIV-1 Have Distinct Post-entry Requirements for Uracil DNA Glycosylase during Infection of Primary Cells
2010 StandoutNobel
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
2014 Standout
Population genomics of post-vaccine changes in pneumococcal epidemiology
2013
Comparative Analysis of Mycobacterium tuberculosis pe and ppe Genes Reveals High Sequence Variation and an Apparent Absence of Selective Constraints
2012
De novo assembly and genotyping of variants using colored de Bruijn graphs
2012
mRNA vaccines — a new era in vaccinology
2018 StandoutNobel
Epigenetics: A Landscape Takes Shape
2007 Standout
Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding
2015
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
Translational Control via Protein-Regulated Upstream Open Reading Frames
2011
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
2008
The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex
2012
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
2011 Standout
Mechanism of inhibition of Mycobacterium tuberculosis antigen 85 by ebselen
2013
Mycobacterium tuberculosis – Heterogeneity revealed through whole genome sequencing
2012
Th17 Cells Mediate Clade-Specific, Serotype-Independent Mucosal Immunity
2011
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
2008 StandoutNature
Using the Acropora digitifera genome to understand coral responses to environmental change
2011 StandoutNature
‘Ribozoomin’ – Translation Initiation from the Perspective of the Ribosome-bound Eukaryotic Initiation Factors (eIFs)
2012
The Mammalian Epigenome
2007 Standout
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
2010
Does M. tuberculosis genomic diversity explain disease diversity?
2010
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
2015 StandoutNature
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
DNA methylation landscapes: provocative insights from epigenomics
2008 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Circos: An information aesthetic for comparative genomics
2009 Standout
Retroviral restriction by APOBEC proteins
2004
Interkingdom Transfer of the Acne-Causing Agent, Propionibacterium acnes, from Human to Grapevine
2014
TET enzymes, TDG and the dynamics of DNA demethylation
2013 StandoutNature
Beyond genome sequencing: Lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer
2014
Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis
2005
Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
2013 Standout
Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering
2016 StandoutNobel
Human Macrophage Responses to Clinical Isolates from the Mycobacterium tuberculosis Complex Discriminate between Ancient and Modern Lineages
2011
NCBI prokaryotic genome annotation pipeline
2016 Standout
Upstream open reading frames: Molecular switches in (patho)physiology
2010
Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance
2011
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
Emerging fungal threats to animal, plant and ecosystem health
2012 StandoutNature
Shotgun Protein Sequencing
2007
A systems approach to infectious disease
2020
A beginner's guide to eukaryotic genome annotation
2012
The Polycomb complex PRC2 and its mark in life
2011 StandoutNature
Structure of the Mammalian Ribosomal 43S Preinitiation Complex Bound to the Scanning Factor DHX29
2013 StandoutNobel
Conserved Immune Recognition Hierarchy of Mycobacterial PE/PPE Proteins during Infection in Natural Hosts
2012
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes
2015
Carboxy-terminal domain of AID required for its mRNA complex formation in vivo
2009 StandoutNobel
Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains
2013 StandoutNobel
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
2012 Standout
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
Visualization of mycobacterial membrane dynamics in live cells
2017 StandoutNobel
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
2015 Standout
EUKARYOTIC CYTOSINE METHYLTRANSFERASES
2005 Standout
Bambus 2: scaffolding metagenomes
2011
Conservation and divergence of methylation patterning in plants and animals
2010 Standout
The Origins of Plant Pathogens in Agro-Ecosystems
2008
Upregulation of the Phthiocerol Dimycocerosate Biosynthetic Pathway by Rifampin-Resistant,rpoBMutant Mycobacterium tuberculosis
2012 StandoutNobel
RNA editing of hepatitis B virus transcripts by activation-induced cytidine deaminase
2013 StandoutNobel
A Fluorogenic Trehalose Probe for Tracking Phagocytosed Mycobacterium tuberculosis
2020 StandoutNobel
Acute Modulation of Mycobacterial Cell Envelope Biogenesis by Front‐Line Tuberculosis Drugs
2018 StandoutNobel
Bayesian Evolutionary Analysis with BEAST
2015
Comparative ribosome profiling reveals extensive translational complexity in differentTrypanosoma bruceilife cycle stages
2014
High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling
2011 Science
Works of James E. Galagan being referenced
Dynamics of Pseudomonas aeruginosa genome evolution
2008
Pneumococcal Capsular Polysaccharide Structure Predicts Serotype Prevalence
2009
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
2010
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
2011
Genomic insights into tuberculosis
2014
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
2005
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
2011
RIP: the evolutionary cost of genome defense
2004
Dual Modes of Natural Selection on Upstream Open Reading Frames
2007
The DNA-binding network of Mycobacterium tuberculosi s
2015
Conrad: Gene prediction using conditional random fields
2007
Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region
2012
GenomeView: a next-generation genome browser
2011
Combo: a whole genome comparative browser
2006
Evolutionary Roles of Upstream Open Reading Frames in Mediating Gene Regulation in Fungi
2009
Dothideomycete–Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum
2007
A Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm
2011